Evidence map›Paper›PMID 24077304›Full record

ArticleGenetics2013

Gene amplification and functional diversification of melanocortin 4 receptor at an extremely polymorphic locus controlling sexual maturation in the platyfish.

Jean-Nicolas Volff, Yvonne Selz, Carsten Hoffmann, Alexander Froschauer, Christina Schultheis, Cornelia Schmidt, Qingchun Zhou, Wolfgang Bernhardt, Reinhold Hanel, Astrid Böhne and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Transposable elements and early evolution of sex chromosomes in fish.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2015
    Article
  10. A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2015
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 2 countries.

Jean-Nicolas VolffInstitut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon-Centre National de la Recherche Scientifique UMR5242-Université Claude Bernard Lyon I, F-69364 Lyon Cedex 07, France.
Yvonne Selz
Carsten Hoffmann
Alexander Froschauer
Christina Schultheis
Cornelia Schmidt
Qingchun Zhou
Wolfgang Bernhardt
Reinhold Hanel
Astrid Böhne
Frédéric Brunet
Béatrice Ségurens
Arnaud Couloux
Sylvie Bernard-Samain
Valérie Barbe
Catherine Ozouf-Costaz
Delphine Galiana
Martin J Lohse
Manfred Schartl
University of Würzburg · DEGenoscope · FRInstitut de Génomique Fonctionnelle de Lyon · FRÉcole Normale Supérieure de Lyon · FRInstitut de Systématique, Évolution, Biodiversité · FRUniversité Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In two swordtail species of the genus Xiphophorus, the onset of puberty has been shown to be modulated at the P locus by sequence polymorphism and gene copy-number variation affecting the type 4 melanocortin hormone receptor Mc4r. The system works through the interaction of two allelic types, one encoding wild type and the other dominant-negative receptors. We have analyzed the structure and evolution of the P locus in the platyfish Xiphophorus maculatus, where as many as nine alleles of P determining the onset of sexual maturity in males and females, fecundity in females, and adult size in males are located on both the X and Y chromosomes in a region linked to the master sex-determining locus. In this species, mc4r has been amplified to up to 10 copies on both the X and Y chromosomes through recent large serial duplications. Subsequently, mc4r paralogues have diverged considerably into many different subtypes. Certain copies have acquired new untranslated regions through genomic rearrangements, and transposable element insertions and other mutations have accumulated in promoter regions, possibly explaining observed deviations from the classical mc4r transcriptional pattern. In the mc4r-coding sequence, in-frame insertions and deletions as well as nonsense and missense mutations have generated a high diversity of Mc4r-predicted proteins. Most of these variants are expressed in embryos, adults, and/or tumors. Functional receptor characterization demonstrated major divergence in pharmacological behavior for Mc4r receptors encoded by different copies of platyfish mc4r, with differences in constitutive activity as well as binding and stimulation by hormones. The high degree of allelic and copy-number variation observed between individuals can explain the high level of polymorphism for sexual maturation, fecundity, and body size in the platyfish: multiple combinations of Mc4r variants with different biochemical properties might interact to modulate the melanocortin signaling that regulates the hypothalamus-pituitary-gonadal axis.

Indexed as

Gene AmplificationPolymorphism, GeneticAmino Acid SequenceAnimalsCyprinodontiformesDNA Transposable ElementsFemaleGene RearrangementGenetic LociGenomeHEK293 CellsHumansINDEL MutationMaleMolecular Sequence DataProtein BindingDNA Transposable ElementsReceptor, Melanocortin, Type 4duplicationfishmelanocortin receptorsex chromosomessexual maturity

Identifiers

PMID24077304
PMCPMC3832277
OpenAlexW2165838018

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.