Evidence map›Paper›PMID 24077301›Full record

ArticleGenetics2013

Noncoding RNAs of the Ultrabithorax domain of the Drosophila bithorax complex.

Benjamin Pease, Ana C Borges, Welcome Bender

Abstract read
In one paragraph

Article in Genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. eLife · 2024
    Article
  3. Article
  4. Article
  5. Recent Advances and Future Potential of Long Non-Coding RNAs in Insects.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Frontiers in immunology · 2022
    Article
  8. International journal of molecular sciences · 2021
    Article
  9. Long Non-Coding RNAs in Insects.Animals : an open access journal from MDPI · 2021
    Review
  10. Article
  11. Review
  12. Insights into the Functions of LncRNAs inInternational journal of molecular sciences · 2019
    Review
  13. Transcription through Polycomb response elements does not induce a switch from repression to activation.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. Review
  15. Neural functions of long noncoding RNAs in Drosophila.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2015
    Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Regulation of gene expression in the genomic context.Computational and structural biotechnology journal · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Benjamin PeaseDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115.
Ana C Borges
Welcome Bender

Funding

MOLECULAR GENETICS OF TWO LOCIR01GM028630 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI BENDER, WELCOME · 1985 to 2017
$3.8M
NIGMS NIH HHS R01 GM028630NIGMS NIH HHS R01-GM028630
6 · The paper itself

Abstract

RNA transcripts without obvious coding potential are widespread in many creatures, including the fruit fly, Drosophila melanogaster. Several noncoding RNAs have been identified within the Drosophila bithorax complex. These first appear in blastoderm stage embryos, and their expression patterns indicate that they are transcribed only from active domains of the bithorax complex. It has been suggested that these noncoding RNAs have a role in establishing active domains, perhaps by setting the state of Polycomb Response Elements A comprehensive survey across the proximal half of the bithorax complex has now revealed nine distinct noncoding RNA transcripts, including four within the Ultrabithorax transcription unit. At the blastoderm stage, the noncoding transcripts collectively span ∼75% of the 135 kb surveyed. Recombination-mediated cassette exchange was used to invert the promoter of one of the noncoding RNAs, a 23-kb transcript from the bxd domain of the bithorax complex. The resulting animals fail to make the normal bxd noncoding RNA and show no transcription across the bxd Polycomb Response Element in early embryos. The mutant flies look normal; the regulation of the bxd domain appears unaffected. Thus, the bxd noncoding RNA has no apparent function.

Indexed as

AnimalsBlastodermDrosophila melanogasterDrosophila ProteinsHomeodomain ProteinsProtein Structure, TertiaryRNA, UntranslatedTranscription FactorsTranscription, GeneticDrosophila ProteinsHomeodomain ProteinsRNA, UntranslatedTranscription FactorsUbx protein, Drosophilabithorax complexbithoraxoidnoncoding RNA (ncRNA)Polycomb response element (PRE)Ultrabithorax

Identifiers

PMID24077301
PMCPMC3832271

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.