Evidence map›Paper›PMID 24076975›Full record

ArticleThe Plant cell2013

The tomato Fni3 lysine-63-specific ubiquitin-conjugating enzyme and suv ubiquitin E2 variant positively regulate plant immunity.

Ravi V Mural, Yao Liu, Tracy R Rosebrock, Jennifer J Brady, Sadia Hamera, Richard A Connor, Gregory B Martin, Lirong Zeng

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 69 citations in OpenAlex.

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  6. Review
  7. Functional Characterization of PotatoInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Ravi V MuralBiology Department, University of Arkansas, Little Rock, Arkansas 72204.
Yao Liu
Tracy R Rosebrock
Jennifer J Brady
Sadia Hamera
Richard A Connor
Gregory B Martin
Lirong Zeng
University of Arkansas at Little Rock · USCornell University · USKing Abdulaziz University · SA

Funding

Role of bacterial virulence proteins in plant cell deathR01GM078021 · NIGMS · BOYCE THOMPSON INST FOR PLANT RESEARCH · PI MARTIN, GREGORY B · 2006 to 2014
$1.8M
NIGMS NIH HHS R01 GM078021NIGMS NIH HHS R01-GM078021
6 · The paper itself

Abstract

The activation of an immune response in tomato (Solanum lycopersicum) against Pseudomonas syringae relies on the recognition of E3 ligase-deficient forms of AvrPtoB by the host protein kinase, Fen. To investigate the mechanisms by which Fen-mediated immunity is regulated, we characterize in this study a Fen-interacting protein, Fni3, and its cofactor, S. lycoperiscum Uev (Suv). Fni3 encodes a homolog of the Ubc13-type ubiquitin-conjugating enzyme that catalyzes exclusively Lys-63-linked ubiquitination, whereas Suv is a ubiquitin-conjugating enzyme variant. The C-terminal region of Fen was necessary for interaction with Fni3, and this interaction was required for cell death triggered by overexpression of Fen in Nicotiana benthamiana leaves. Fni3 was shown to be an active E2 enzyme, but Suv displayed no ubiquitin-conjugating activity; Fni3 and Suv together directed Lys-63-linked ubiquitination. Decreased expression of Fni3, another tomato Ubc13 homolog, Sl-Ubc13-2, or Suv in N. benthamiana leaves diminished cell death associated with Fen-mediated immunity and cell death elicited by several other resistance (R) proteins and their cognate effectors. We also discovered that coexpression of Fen and other R proteins/effectors with a Fni3 mutant that is compromised for ubiquitin-conjugating activity diminished the cell death. These results suggest that Fni3/Sl-Ubc13-2 and Suv regulate the immune response mediated by Fen and other R proteins through Lys-63-linked ubiquitination.

Indexed as

Plant ImmunityBase SequenceGene SilencingMolecular Sequence DataNicotianaPhylogenyPlant DiseasesPlant ProteinsProtein BindingProtein Serine-Threonine KinasesProtein StabilityPseudomonas syringaeSequence Analysis, DNASolanum lycopersicumTwo-Hybrid System TechniquesUbiquitinFen protein, Lycopersicon esculentumPlant ProteinsProtein Serine-Threonine KinasesUbiquitinUbiquitin-Conjugating Enzymes

Identifiers

PMID24076975
PMCPMC3809553
OpenAlexW2098627200

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.