Evidence map›Paper›PMID 24076602›Full record

ArticleNature genetics2013

Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.

International Multiple Sclerosis Genetics Consortium (IMSGC), Ashley H Beecham, Nikolaos A Patsopoulos, Dionysia K Xifara, Mary F Davis, Anu Kemppinen, Chris Cotsapas, Tejas S Shah, Chris Spencer, David Booth and 186 more

Registry-linked trialAbstract read
In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03586986 (Risk Factors in Early Multiple Sclerosis), which is not on this map. Cited by 740 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
740citing papers in PubMed, 11 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03586986 unknown statusnot on this mapstarted 2018, after this paper: background citation

Risk Factors in Early Multiple Sclerosis

TypeobservationalSponsorUniversity of Colorado, DenverRan2018 to 2024Enrolled300ConditionsMultiple Sclerosis, Magnetic Resonance Imaging, Biomarkers, Clinically Isolated SyndromeArmsBrain MRI
3 · Its place in the literature

Who cites it

740 citing papers in PubMed, 11 syntheses or guidelines pooled it.

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  6. Behçet's Disease: A Comprehensive Review on the Role ofInternational journal of molecular sciences · 2023
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  20. rs57494551 increases CXCR5 expression and IgMJournal of gastroenterology · 2026
    Article

680 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

196 authors.

International Multiple Sclerosis Genetics Consortium (IMSGC)1] John P. Hussman Institute for Human Genomics, University of Miami, Miller School of Medicine, Miami, Florida, USA. [2].
Ashley H Beecham
Nikolaos A Patsopoulos
Dionysia K Xifara
Mary F Davis
Anu Kemppinen
Chris Cotsapas
Tejas S Shah
Chris Spencer
David Booth
An Goris
Annette Oturai
Janna Saarela
Bertrand Fontaine
Bernhard Hemmer
Claes Martin
Frauke Zipp
Sandra D'Alfonso
Filippo Martinelli-Boneschi
Bruce Taylor
Hanne F Harbo
Ingrid Kockum
Jan Hillert
Tomas Olsson
Maria Ban
Jorge R Oksenberg
Rogier Hintzen
Lisa F Barcellos
Wellcome Trust Case Control Consortium 2 (WTCCC2)
International IBD Genetics Consortium (IIBDGC)
Cristina Agliardi
Lars Alfredsson
Mehdi Alizadeh
Carl Anderson
Robert Andrews
Helle Bach Søndergaard
Amie Baker
Gavin Band
Sergio E BaranziniORCID 000000030067194X
Nadia Barizzone
Jeffrey BarrettORCID 000000021152370X
Céline Bellenguez
Laura Bergamaschi
Luisa Bernardinelli
Achim Berthele
Viola Biberacher
Thomas M C Binder
Hannah Blackburn
Izaura L Bomfim
Paola Brambilla
Simon Broadley
Bruno Brochet
Lou Brundin
Dorothea Buck
Helmut Butzkueven
Stacy J Caillier
William Camu
Wassila Carpentier
Paola Cavalla
Elisabeth G Celius
Irène Coman
Giancarlo Comi
Lucia Corrado
Leentje Cosemans
Isabelle Cournu-Rebeix
Bruce A C Cree
Daniele Cusi
Vincent Damotte
Gilles Defer
Silvia R Delgado
Panos Deloukas
Alessia di Sapio
Alexander T Dilthey
Peter Donnelly
Bénédicte Dubois
Martin Duddy
Sarah Edkins
Irina Elovaara
Federica Esposito
Nikos Evangelou
Judith Field
Andre Franke
Colin Freeman
Irene Y Frohlich
Daniela Galimberti
Christian Gieger
Pierre-Antoine Gourraud
Christiane Graetz
Andrew Graham
Verena Grummel
Clara Guaschino
Athena Hadjixenofontos
Hakon Hakonarson
Christopher Halfpenny
Gillian Hall
Per Hall
Anders Hamsten
James Harley
Timothy Harrower
Clive Hawkins
Garrett Hellenthal
Charles Hillier
Jeremy Hobart
Muni Hoshi
Sarah E Hunt
Maja Jagodic
Ilijas Jelčić
Angela Jochim
Brian Kendall
Allan Kermode
Trevor Kilpatrick
Keijo Koivisto
Ioanna Konidari
Thomas Korn
Helena Kronsbein
Cordelia Langford
Malin Larsson
Mark Lathrop
Christine Lebrun-Frenay
Jeannette Lechner-Scott
Michelle H Lee
Maurizio A Leone
Virpi Leppä
Giuseppe Liberatore
Benedicte A Lie
Christina M Lill
Magdalena Lindén
Jenny Link
Felix Luessi
Jan Lycke
Fabio Macciardi
Satu Männistö
Clara P Manrique
Roland Martin
Vittorio Martinelli
Deborah Mason
Gordon Mazibrada
Cristin McCabe
Inger-Lise Mero
Julia Mescheriakova
Loukas Moutsianas
Kjell-Morten Myhr
Guy Nagels
Richard Nicholas
Petra Nilsson
Fredrik Piehl
Matti Pirinen
Siân E Price
Hong Quach
Mauri Reunanen
Wim Robberecht
Neil P Robertson
Mariaemma Rodegher
David Rog
Marco Salvetti
Nathalie C Schnetz-Boutaud
Finn Sellebjerg
Rebecca C Selter
Catherine Schaefer
Sandip Shaunak
Ling Shen
Simon Shields
Volker Siffrin
Mark Slee
Per Soelberg Sorensen
Melissa Sorosina
Mireia Sospedra
Anne Spurkland
Amy Strange
Emilie Sundqvist
Vincent Thijs
John Thorpe
Anna Ticca
Pentti Tienari
Cornelia van Duijn
Elizabeth M Visser
Steve Vucic
Helga Westerlind
James S Wiley
Alastair Wilkins
James F Wilson
Juliane Winkelmann
John Zajicek
Eva Zindler
Jonathan L Haines
Margaret A Pericak-Vance
Adrian J Ivinson
Graeme Stewart
David Hafler
Stephen L Hauser
Alastair Compston
Gil McVean
Philip De Jager
Stephen J Sawcer
Jacob L McCauley

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
A Haplotype Map for Multiple SclerosisR01NS049477 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HAUSER, STEPHEN L · 2005 to 2014
$15.3M
The Genetic Epemiology of Multiple SclerosisR01NS032830 · NINDS · VANDERBILT UNIVERSITY · PI HAINES, JONATHAN L · 1995 to 2010
$8.9M
Gene Expression and Regulatory Networks in Human LeukocytesRC2GM093080 · NIGMS · HARVARD MEDICAL SCHOOL · PI BENOIST, CHRISTOPHE O., MATHIS, DIANE J · 2009 to 2010
$7.3M
GENE LINKAGE STUDY OF MULTIPLE SCLEROSIS SIBLING PAIRSR01NS026799 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HAUSER, STEPHEN L, OKSENBERG, JORGE R. · 1989 to 2018
$6.8M
The Identification of Risk Factors for the Complex MS PhenotypeR01AI076544 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI BARCELLOS, LISA F · 2008 to 2012
$3.6M
Novel Strategies to Identify GxE Contributions to MS PathogenesisR01ES017080 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BARCELLOS, LISA F · 2011 to 2015
$3.0M
Genetic and non-genetic risk factors in MSR01NS049510 · NINDS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BARCELLOS, LISA F · 2005 to 2009
$2.7M
Genetic determinants of postmenopausal breast cancerR01CA104021 · NCI · KAROLINSKA INSTITUTE · PI HALL, PER · 2005 to 2009
$2.1M
The Role of Rare Variants in Multiple Sclerosis RiskRC2NS070340 · NINDS · YALE UNIVERSITY · PI HAFLER, DAVID A. · 2009 to 2010
$1.9M
Exploring the consequences of the TNFRSF1A susceptibility allele for MSR01NS067305 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI DE JAGER, PHILIP L · 2009 to 2011
$1.2M
Chief Scientist Office CZB/4/710Chief Scientist Office ETM/137Medical Research Council G0000934Medical Research Council G0600329Medical Research Council G0700061Medical Research Council G0800675Medical Research Council G0800759Multiple Sclerosis Society 862Multiple Sclerosis Society 894Multiple Sclerosis Society 898Multiple Sclerosis Society 955NCI NIH HHS R01 CA104021NCRR NIH HHS UL1 RR024975NIAID NIH HHS R01 AI076544NIEHS NIH HHS R01 ES017080NIGMS NIH HHS RC2 GM093080NINDS NIH HHS R01 NS026799NINDS NIH HHS R01 NS032830NINDS NIH HHS R01 NS049477NINDS NIH HHS R01 NS049510NINDS NIH HHS R01 NS067305NINDS NIH HHS RC2 NS070340Wellcome Trust 068545Wellcome Trust 085475DONNELLYWellcome Trust 085475PELTONENWellcome Trust 090532Wellcome Trust 095552Wellcome Trust 098051
6 · The paper itself

Abstract

Using the ImmunoChip custom genotyping array, we analyzed 14,498 subjects with multiple sclerosis and 24,091 healthy controls for 161,311 autosomal variants and identified 135 potentially associated regions (P < 1.0 × 10(-4)). In a replication phase, we combined these data with previous genome-wide association study (GWAS) data from an independent 14,802 subjects with multiple sclerosis and 26,703 healthy controls. In these 80,094 individuals of European ancestry, we identified 48 new susceptibility variants (P < 5.0 × 10(-8)), 3 of which we found after conditioning on previously identified variants. Thus, there are now 110 established multiple sclerosis risk variants at 103 discrete loci outside of the major histocompatibility complex. With high-resolution Bayesian fine mapping, we identified five regions where one variant accounted for more than 50% of the posterior probability of association. This study enhances the catalog of multiple sclerosis risk variants and illustrates the value of fine mapping in the resolution of GWAS signals.

Indexed as

Chromosome MappingGene FrequencyGenetic LociGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyGenotypeHumansMultiple SclerosisPolymorphism, Single NucleotideWhite People

Identifiers

PMID24076602
PMCPMC3832895

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.