Evidence map›Paper›PMID 24076275›Full record

ArticleExperimental cell research2014

Altered epigenetic regulation of homeobox genes in human oral squamous cell carcinoma cells.

Katarzyna M Marcinkiewicz, Lorraine J Gudas

Abstract read
In one paragraph

Article in Experimental cell research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
  3. TheBiomolecules · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. The transcription factor BMI1 increases hypoxic signaling in oral cavity epithelia.Biochimica et biophysica acta. Molecular basis of disease · 2024
    Article
  9. Review
  10. Article
  11. Article
  12. Role of HOXC10 in Cancer.Frontiers in oncology · 2021
    Review
  13. TheFrontiers in molecular neuroscience · 2021
    Article
  14. Disease models & mechanisms · 2020
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Katarzyna M MarcinkiewiczDepartment of Pharmacology, Weill Cornell Medical College of Cornell University, 1300 York Avenue, New York, NY 10065, USA; Department of Pharmacology, Weill Cornell Graduate School of Medical Sciences of Cornell University, 1300 York Avenue, New York, NY 10065, USA.
Lorraine J Gudas
Cornell University · US

Funding

SQUAMOUS CELL CARCINOMAS - EFFECTS OF RETINOIDSR01DE010389 · NIDCR · WEILL MEDICAL COLL OF CORNELL UNIV · PI GUDAS, LORRAINE J · 1992 to 2014
$5.2M
Predoctoral Training in Pharmacological SciencesT32GM073546 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI GROSS, STEVEN S · 2006 to 2020
$3.1M
Epigenetic Changes in Retinoid Signaling in Oral Cavity CarcinogenesisF31DE021316 · NIDCR · WEILL MEDICAL COLL OF CORNELL UNIV · PI MARCINKIEWICZ, KATARZYNA MARIA · 2010 to 2013
$128k
NIDCR NIH HHS F31 DE021316NIDCR NIH HHS F31-DE021316NIDCR NIH HHS R01 DE010389NIDCR NIH HHS R01DE010389NIGMS NIH HHS 5T32GM073546-04NIGMS NIH HHS T32 GM073546
6 · The paper itself

Abstract

To gain insight into oral squamous cell carcinogenesis, we performed deep sequencing (RNAseq) of non-tumorigenic human OKF6-TERT1R and tumorigenic SCC-9 cells. Numerous homeobox genes are differentially expressed between OKF6-TERT1R and SCC-9 cells. Data from Oncomine, a cancer microarray database, also show that homeobox (HOX) genes are dysregulated in oral SCC patients. The activity of Polycomb repressive complexes (PRC), which causes epigenetic modifications, and retinoic acid (RA) signaling can control HOX gene transcription. HOXB7, HOXC10, HOXC13, and HOXD8 transcripts are higher in SCC-9 than in OKF6-TERT1R cells; using ChIP (chromatin immunoprecipitation) we detected PRC2 protein SUZ12 and the epigenetic H3K27me3 mark on histone H3 at these genes in OKF6-TERT1R, but not in SCC-9 cells. In contrast, IRX1, IRX4, SIX2 and TSHZ3 transcripts are lower in SCC-9 than in OKF6-TERT1R cells. We detected SUZ12 and the H3K27me3 mark at these genes in SCC-9, but not in OKF6-TERT1R cells. SUZ12 depletion increased HOXB7, HOXC10, HOXC13, and HOXD8 transcript levels and decreased the proliferation of OKF6-TERT1R cells. Transcriptional responses to RA are attenuated in SCC-9 versus OKF6-TERT1R cells. SUZ12 and H3K27me3 levels were not altered by RA at these HOX genes in SCC-9 and OKF6-TERT1R cells. We conclude that altered activity of PRC2 is associated with dysregulation of homeobox gene expression in human SCC cells, and that this dysregulation potentially plays a role in the neoplastic transformation of oral keratinocytes.

Indexed as

Carcinoma, Squamous CellCell ProliferationEpigenesis, GeneticGenes, HomeoboxHEK293 CellsHumansMouth NeoplasmsRNA, MessengerTumor Cells, CulturedRNA, MessengerChIPChromatinchromatin immunoprecipitationEpigenetic silencingGAPDHgene ontologyglyceraldehyde 3-phosphate dehydrogenaseGOH3K27me3head and neck squamous cell carcinomaHead and neck squamous cell carcinomahistone 3 lysine 27 trimethylHNSCChomeoboxHomeoboxHOXHPRT1hypoxanthine phosphoribosyltransferase 1oral squamous cell carcinomaOral squamous cell carcinomaOSCCPolycombpolycomb repressive complexesPRCqRT-PCRquantitative real time polymerase chain reactionRARARRAREretinoic acidRetinoic acidretinoic acid receptorretinoic acid response elementretinoid X receptorRNA-seqRNAseqRNA sequencingRXRSCCshort hairpin RNAshRNAsquamous cell carcinomaSUZ12TNMTNM classification of malignant tumoursTumorigenesisWCMCWeill Cornell Medical College

Identifiers

PMID24076275
PMCPMC3880227
OpenAlexW1998622415

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.