Evidence map›Paper›PMID 24075995›Full record

ArticleCell reports2013

Targeted disruption of Hotair leads to homeotic transformation and gene derepression.

Lingjie Li, Bo Liu, Orly L Wapinski, Miao-Chih Tsai, Kun Qu, Jiajing Zhang, Jeff C Carlson, Meihong Lin, Fengqin Fang, Rajnish A Gupta and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 201 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
201citing papers in PubMed, 1 pooled it
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

201 citing papers in PubMed, 1 synthesis or guideline pooled it, 311 citations in OpenAlex.

  1. Pooled it
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  8. Article
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  14. Article
  15. HOTAIR in colorectal cancer: structure, function, and therapeutic potential.Medical oncology (Northwood, London, England) · 2023
    Review
  16. The lncRNA HOTAIR: a pleiotropic regulator of epithelial cell plasticity.Journal of experimental & clinical cancer research : CR · 2023
    Review
  17. Review
  18. Review
  19. lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.Database : the journal of biological databases and curation · 2023
    Article
  20. Review

141 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Lingjie LiHoward Hughes Medical Institute and Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Bo Liu
Orly L Wapinski
Miao-Chih Tsai
Kun Qu
Jiajing Zhang
Jeff C Carlson
Meihong Lin
Fengqin Fang
Rajnish A Gupta
Jill A Helms
Howard Y Chang
Stanford University · USHoward Hughes Medical Institute · US

Funding

Leveraging innovative technologies in basic and clinical cancer researchT32CA009302 · NCI · STANFORD UNIVERSITY · PI LAURA D ATTARDI, Aaron M Newman · 1985 to 2026
$19.1M
Wound Response Genes in Cancer ProgressionR01CA118750 · NCI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2007 to 2016
$2.9M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA118750NCI NIH HHS R01-CA118750
6 · The paper itself

Abstract

Long noncoding RNAs (lncRNAs) are thought to be prevalent regulators of gene expression, but the consequences of lncRNA inactivation in vivo are mostly unknown. Here, we show that targeted deletion of mouse Hotair lncRNA leads to derepression of hundreds of genes, resulting in homeotic transformation of the spine and malformation of metacarpal-carpal bones. RNA sequencing and conditional inactivation reveal an ongoing requirement of Hotair to repress HoxD genes and several imprinted loci such as Dlk1-Meg3 and Igf2-H19 without affecting imprinting choice. Hotair binds to both Polycomb repressive complex 2, which methylates histone H3 at lysine 27 (H3K27), and Lsd1 complex, which demethylates histone H3 at lysine 4 (H3K4) in vivo. Hotair inactivation causes H3K4me3 gain and, to a lesser extent, H3K27me3 loss at target genes. These results reveal the function and mechanisms of Hotair lncRNA in enforcing a silent chromatin state at Hox and additional genes.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBone and BonesBone DevelopmentFemaleHomeodomain ProteinsHumansMiceMice, KnockoutRepressor ProteinsRNA, Long NoncodingHomeodomain ProteinsHOTAIR long untranslated RNA, humanRepressor ProteinsRNA, Long Noncoding

Identifiers

PMID24075995
PMCPMC4038295
OpenAlexW2111309204

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.