Evidence map›Paper›PMID 24075869›Full record

ArticleJournal of molecular biology2014

Disruption of helix-capping residues 671 and 674 reveals a role in HIV-1 entry for a specialized hinge segment of the membrane proximal external region of gp41.

Zhen-Yu J Sun, Yuxing Cheng, Mikyung Kim, Likai Song, Jaewon Choi, Ulrich J Kudahl, Vladimir Brusic, Barnali Chowdhury, Lu Yu, Michael S Seaman and 4 more

Abstract read
In one paragraph

Article in Journal of molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

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  5. Topological analysis of the gp41 MPER on lipid bilayers relevant to the metastable HIV-1 envelope prefusion state.Proceedings of the National Academy of Sciences of the United States of America · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Zhen-Yu J SunDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Yuxing ChengLaboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Mikyung KimLaboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA; Department of Medicine, Harvard Medical School, Boston, MA 02115, USA.
Likai SongNational High Magnetic Field Laboratory, Florida State University, Tallahassee, FL 32310, USA.
Jaewon ChoiLaboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Ulrich J KudahlCancer Vaccine Center and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Vladimir BrusicDepartment of Medicine, Harvard Medical School, Boston, MA 02115, USA; Cancer Vaccine Center and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Barnali ChowdhuryNational High Magnetic Field Laboratory, Florida State University, Tallahassee, FL 32310, USA.
Lu YuNational High Magnetic Field Laboratory, Florida State University, Tallahassee, FL 32310, USA.
Michael S SeamanDepartment of Medicine, Beth Israel Deaconess Medical Center, Boston, MA 02115, USA.
Gaëtan BellotDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA; Wyss Institute for Biologically Inspired Engineering at Harvard, Boston, MA 02115, USA.
William M ShihDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA; Wyss Institute for Biologically Inspired Engineering at Harvard, Boston, MA 02115, USA.
Gerhard WagnerDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Ellis L ReinherzLaboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA; Department of Medicine, Harvard Medical School, Boston, MA 02115, USA. Electronic address: Ellis_Reinherz@dfci.harvard.edu.
Harvard University · USDana-Farber Cancer Institute · USNational High Magnetic Field Laboratory · USBeth Israel Deaconess Medical Center · USFlorida State University · US

Funding

T CELL SPECIFIC TRANSCRIPTION COMPLEXESP01GM047467 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1992 to 2017
$28.6M
Project 4 (Goethe University of Frankfurt)U54GM094608 · NIGMS · HARVARD MEDICAL SCHOOL · PI CHOU, JAMES JEIWEN · 2010 to 2014
$11.5M
Structural Approches to HIV-1 Immunogen Design for BNAb GenerationU19AI091693 · NIAID · DANA-FARBER CANCER INST · PI REINHERZ, ELLIS L · 2010 to 2015
$9.9M
Structural Approaches To HIV-1 Immunogen Design For BNAb GenerationR01AI084785 · NIAID · DANA-FARBER CANCER INST · PI REINHERZ, ELLIS L · 2009 to 2013
$2.9M
NMR Structure Determination of Membrane Proteins Enabled by DNA NanotubesDP2OD004641 · OD · DANA-FARBER CANCER INST · PI SHIH, WILLIAM M · 2008 to 2008
$2.6M
NIAID NIH HHS AI084785NIAID NIH HHS AI091693NIAID NIH HHS R01 AI084785NIAID NIH HHS U19 AI091693NIGMS NIH HHS 1U54GM094608NIGMS NIH HHS GM047467NIGMS NIH HHS P01 GM047467NIGMS NIH HHS U54 GM094608NIH HHS 1DP2OD004641NIH HHS DP2 OD004641
6 · The paper itself

Abstract

HIV-1 (human immunodeficiency virus type 1) uses its trimeric gp160 envelope (Env) protein consisting of non-covalently associated gp120 and gp41 subunits to mediate entry into human T lymphocytes. A facile virus fusion mechanism compensates for the sparse Env copy number observed on viral particles and includes a 22-amino-acid, lentivirus-specific adaptation at the gp41 base (amino acid residues 662-683), termed the membrane proximal external region (MPER). We show by NMR and EPR that the MPER consists of a structurally conserved pair of viral lipid-immersed helices separated by a hinge with tandem joints that can be locked by capping residues between helices. This design fosters efficient HIV-1 fusion via interconverting structures while, at the same time, affording immune escape. Disruption of both joints by double alanine mutations at Env positions 671 and 674 (AA) results in attenuation of Env-mediated cell-cell fusion and hemifusion, as well as viral infectivity mediated by both CD4-dependent and CD4-independent viruses. The potential mechanism of disruption was revealed by structural analysis of MPER conformational changes induced by AA mutation. A deeper acyl chain-buried MPER middle section and the elimination of cross-hinge rigid-body motion almost certainly impede requisite structural rearrangements during the fusion process, explaining the absence of MPER AA variants among all known naturally occurring HIV-1 viral sequences. Furthermore, those broadly neutralization antibodies directed against the HIV-1 MPER exploit the tandem joint architecture involving helix capping, thereby disrupting hinge function.

Indexed as

Virus InternalizationAmino Acid SequenceElectron Spin Resonance SpectroscopyFlow CytometryHIV-1HIV Envelope Protein gp120HIV Envelope Protein gp41HIV InfectionsHumansMagnetic Resonance SpectroscopyMembrane FusionMolecular Sequence DataMutationPeptide FragmentsSequence Homology, Amino AcidHIV Envelope Protein gp120HIV Envelope Protein gp41Peptide Fragmentsbroadly neutralizing antibodyhelix cappinghelix–hinge–helix motifNMR solution structureviral membrane fusion

Identifiers

PMID24075869
PMCPMC3934758
OpenAlexW2007515512

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.