Evidence map›Paper›PMID 24074585›Full record

ArticleVirology2013

Mutation from arginine to lysine at the position 189 of hemagglutinin contributes to the antigenic drift in H3N2 swine influenza viruses.

Jianqiang Ye, Yifei Xu, Jillian Harris, Hailiang Sun, Andrew S Bowman, Fred Cunningham, Carol Cardona, Kyoungjin J Yoon, Richard D Slemons, Xiu-Feng Wan

Open access · greenAbstract read
In one paragraph

Article in Virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Jianqiang YeDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, United States.
Yifei Xu
Jillian Harris
Hailiang Sun
Andrew S Bowman
Fred Cunningham
Carol Cardona
Kyoungjin J Yoon
Richard D Slemons
Xiu-Feng Wan
Mississippi State University · USThe Ohio State University · USIowa State University · USNational Wildlife Research CenterUniversity of Minnesota · US

Funding

Prediction of influenza antigenic variants using a novel sparse multitask learninRC1AI086830 · NIAID · MISSISSIPPI STATE UNIVERSITY · PI WAN, XIUFENG HENRY · 2010 to 2010
$413k
NIAID NIH HHS HHSN266200700007CNIAID NIH HHS RC1 AI086830
6 · The paper itself

Abstract

Two distinct antigenic clusters were previously identified among the H3N2 swine influenza A viruses (IAVs) and were designated H3N2SIV-alpha and H3N2SIV-beta (Feng et al., 2013. Journal of Virology 87 (13), 7655-7667). A consistent mutation was observed at the position 189 of hemagglutinin (R189K) between H3N2SIV-alpha and H3N2SIV-beta fair isolates. To evaluate the contribution of R189K mutation to the antigenic drift from H3N2SIV-alpha to H3N2SIV-beta, four reassortant viruses with 189R or 189K were generated. The antigenic cartography demonstrated that the R189K mutation in the hemagglutinin of H3N2 IAV contributed to the antigenic drift, separating these viruses into H3N2SIV-alpha to H3N2SIV-beta. This R189K mutation was also found to contribute to the cross-reaction with several ferret sera raised against historical human IAVs with hemagglutinin carrying 189K. This study suggests that the R189K mutation plays a vital role in the antigenicity of swine and human H3N2 IAVs and identification of this antigenic determinant will help us rapidly identify antigenic variants in influenza surveillance.

Indexed as

Genetic DriftMutation, MissenseAnimalsAntibodies, ViralAntigens, ViralArginineCross ReactionsFerretsHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza A Virus, H3N2 SubtypeLysineOrthomyxoviridaeReassortant VirusesReverse GeneticsSwineAntibodies, ViralAntigens, ViralArginineHemagglutinin Glycoproteins, Influenza VirusLysineAntigenic cartographyAntigenic driftAntigenic variantH3N2H3N2vInfluenza A virusR189KSerological assay

Identifiers

PMID24074585
PMCPMC4161209
OpenAlexW2067052164

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.