Evidence map›Paper›PMID 24072820›Full record

ArticleScience (New York, N.Y.)2013

Architecture of an RNA polymerase II transcription pre-initiation complex.

Kenji Murakami, Hans Elmlund, Nir Kalisman, David A Bushnell, Christopher M Adams, Maia Azubel, Dominika Elmlund, Yael Levi-Kalisman, Xin Liu, Brian J Gibbons and 2 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Structural Biology in the Multi-Omics Era.Journal of chemical information and modeling · 2020
    Article
  16. Review
  17. Identification of Cross-linked Peptides Using Isotopomeric Cross-linkers.Journal of the American Society for Mass Spectrometry · 2019
    Article
  18. The TAFs of TFIID Bind and Rearrange the Topology of the TATA-LessInternational journal of molecular sciences · 2019
    Article
  19. Review
  20. Article

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kenji MurakamiDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Hans Elmlund
Nir Kalisman
David A Bushnell
Christopher M Adams
Maia Azubel
Dominika Elmlund
Yael Levi-Kalisman
Xin Liu
Brian J Gibbons
Michael Levitt
Roger D Kornberg

Funding

Structure of the Eukaryote Transcription ApparatusR01AI021144 · NIAID · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1985 to 2018
$10.3M
Accurate Molecular Modeling in Structural GenomicsR01GM063817 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 2001 to 2016
$5.0M
RNA POLYMERASE II TRANSCRIPTION SYSTEM FROM YEASTR01GM036659 · NIGMS · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1986 to 2016
$4.7M
Facilitating large scale biomass generation: acquisition of an automated 100 L feS10RR028096 · NCRR · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 2010 to 2010
$324k
NCRR NIH HHS S10 RR028096NIAID NIH HHS AI21144NIAID NIH HHS R01 AI021144NIGMS NIH HHS GM063817NIGMS NIH HHS GM49885NIGMS NIH HHS R01 GM036659NIGMS NIH HHS R01 GM063817
6 · The paper itself

Abstract

The protein density and arrangement of subunits of a complete, 32-protein, RNA polymerase II (pol II) transcription pre-initiation complex (PIC) were determined by means of cryogenic electron microscopy and a combination of chemical cross-linking and mass spectrometry. The PIC showed a marked division in two parts, one containing all the general transcription factors (GTFs) and the other pol II. Promoter DNA was associated only with the GTFs, suspended above the pol II cleft and not in contact with pol II. This structural principle of the PIC underlies its conversion to a transcriptionally active state; the PIC is poised for the formation of a transcription bubble and descent of the DNA into the pol II cleft.

Indexed as

Gene Expression Regulation, FungalTranscription Initiation, GeneticCryoelectron MicroscopyDNA, FungalMultiprotein ComplexesNucleic Acid ConformationProtein ConformationRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factors, GeneralDNA, FungalMultiprotein ComplexesRNA Polymerase IISaccharomyces cerevisiae ProteinsTranscription Factors, General

Identifiers

PMID24072820
PMCPMC4039082

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.