Evidence map›Paper›PMID 24072705›Full record

ArticleThe Journal of biological chemistry2013

A nondiscriminating glutamyl-tRNA synthetase in the plasmodium apicoplast: the first enzyme in an indirect aminoacylation pathway.

Boniface M Mailu, Gowthaman Ramasamay, Devaraja G Mudeppa, Ling Li, Scott E Lindner, Megan J Peterson, Amy E DeRocher, Stefan H I Kappe, Pradipsinh K Rathod, Malcolm J Gardner

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Translational regulation during stage transitions in malaria parasites.Annals of the New York Academy of Sciences · 2015
    Review
  8. tRNA biology in mitochondria.International journal of molecular sciences · 2015
    Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Boniface M MailuFrom the Seattle Biomedical Research Institute, Seattle, Washington 98109.
Gowthaman RamasamayFrom the Seattle Biomedical Research Institute, Seattle, Washington 98109.
Devaraja G Mudeppathe Department of Chemistry, University of Washington, Seattle, Washington 98195-1700.
Ling LiFrom the Seattle Biomedical Research Institute, Seattle, Washington 98109.
Scott E LindnerFrom the Seattle Biomedical Research Institute, Seattle, Washington 98109.
Megan J PetersonFrom the Seattle Biomedical Research Institute, Seattle, Washington 98109.
Amy E DeRocherFrom the Seattle Biomedical Research Institute, Seattle, Washington 98109.
Stefan H I KappeFrom the Seattle Biomedical Research Institute, Seattle, Washington 98109,; the Department of Global Health, University of Washington, Seattle, Washington 98195.
Pradipsinh K Rathodthe Department of Chemistry, University of Washington, Seattle, Washington 98195-1700; the Department of Global Health, University of Washington, Seattle, Washington 98195.
Malcolm J GardnerFrom the Seattle Biomedical Research Institute, Seattle, Washington 98109,; the Department of Global Health, University of Washington, Seattle, Washington 98195. Electronic address: malcolm.gardner@seattlebiomed.org.
Center for Infectious Disease Research · USUniversity of Washington · US

Funding

Shared TechnologyU19AI089688 · NIAID · UNIVERSITY OF WASHINGTON · PI RATHOD, PRADIPSINH K. · 2010 to 2023
$22.4M
Malaria Topoisomerase inhibitorsR01AI093380 · NIAID · UNIVERSITY OF WASHINGTON · PI RATHOD, PRADIPSINH K. · 2011 to 2020
$3.4M
Chemical Genomics for Antimalarial TargetsR01AI099280 · NIAID · UNIVERSITY OF WASHINGTON · PI RATHOD, PRADIPSINH K. · 2012 to 2016
$2.5M
Indirect aminoacylation in the Plasmodium apicoplastR21AI081097 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI GARDNER, MALCOLM JOHN · 2009 to 2010
$528k
NIAID NIH HHS AI 093380NIAID NIH HHS AI 099280NIAID NIH HHS R01 AI093380NIAID NIH HHS R01 AI099280NIAID NIH HHS R21 AI081097NIAID NIH HHS R21AI81097NIAID NIH HHS U19 AI089688Wellcome Trust
6 · The paper itself

Abstract

The malaria parasite Plasmodium falciparum and related organisms possess a relict plastid known as the apicoplast. Apicoplast protein synthesis is a validated drug target in malaria because antibiotics that inhibit translation in prokaryotes also inhibit apicoplast protein synthesis and are sometimes used for malaria prophylaxis or treatment. We identified components of an indirect aminoacylation pathway for Gln-tRNA(Gln) biosynthesis in Plasmodium that we hypothesized would be essential for apicoplast protein synthesis. Here, we report our characterization of the first enzyme in this pathway, the apicoplast glutamyl-tRNA synthetase (GluRS). We expressed the recombinant P. falciparum enzyme in Escherichia coli, showed that it is nondiscriminating because it glutamylates both apicoplast tRNA(Glu) and tRNA(Gln), determined its kinetic parameters, and demonstrated its inhibition by a known bacterial GluRS inhibitor. We also localized the Plasmodium berghei ortholog to the apicoplast in blood stage parasites but could not delete the PbGluRS gene. These data show that Gln-tRNA(Gln) biosynthesis in the Plasmodium apicoplast proceeds via an essential indirect aminoacylation pathway that is reminiscent of bacteria and plastids.

Indexed as

ApicoplastsGlutamate-tRNA LigaseHumansPlasmodium bergheiPlasmodium falciparumProtein BiosynthesisProtozoan ProteinsRNA, Transfer, GlnRNA, Transfer, GluTransfer RNA AminoacylationGlutamate-tRNA LigaseProtozoan ProteinsRNA, Transfer, GlnRNA, Transfer, GluAminoacyl tRNA SynthetaseApicoplastMalariaNucleic Acid EnzymologyPlasmodiumTransfer RNA (tRNA)

Identifiers

PMID24072705
PMCPMC3820887
OpenAlexW1972990273

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.