Evidence map›Paper›PMID 24072704›Full record

ArticleThe Journal of biological chemistry2013

Role of Ser-257 in the sliding mechanism of NADP(H) in the reaction catalyzed by the Aspergillus fumigatus flavin-dependent ornithine N5-monooxygenase SidA.

Carolyn Shirey, Somayesadat Badieyan, Pablo Sobrado

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Flavin oxidation in flavin-dependent N-monooxygenases.Protein science : a publication of the Protein Society · 2019
    Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Carolyn ShireyFrom the Department of Biochemistry.
Somayesadat BadieyanFrom the Department of Biochemistry.
Pablo SobradoFrom the Department of Biochemistry; the Virginia Tech Center for Drug Discovery, Virginia Tech, Blacksburg, Virginia 24061. Electronic address: psobrado@vt.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SidA (siderophore A) is a flavin-dependent N-hydroxylating monooxygenase that is essential for virulence in Aspergillus fumigatus. SidA catalyzes the NADPH- and oxygen-dependent formation of N(5)-hydroxyornithine. In this reaction, NADPH reduces the flavin, and the resulting NADP(+) is the last product to be released. The presence of NADP(+) is essential for activity, as it is required for stabilization of the C4a-hydroperoxyflavin, which is the hydroxylating species. As part of our efforts to determine the molecular details of the role of NADP(H) in catalysis, we targeted Ser-257 for site-directed mutagenesis and performed extensive characterization of the S257A enzyme. Using a combination of steady-state and stopped-flow kinetic experiments, substrate analogs, and primary kinetic isotope effects, we show that the interaction between Ser-257 and NADP(H) is essential for stabilization of the C4a-hydroperoxyflavin. Molecular dynamics simulation results suggest that Ser-257 functions as a pivot point, allowing the nicotinamide of NADP(+) to slide into position for stabilization of the C4a-hydroperoxyflavin.

Indexed as

Amino Acid SubstitutionAspergillus fumigatusCatalysisFlavinsFungal ProteinsMixed Function OxygenasesMutagenesis, Site-DirectedMutation, MissenseNADPSerineC4a-hydroperoxyflavinFlavinsFungal ProteinsMixed Function OxygenasesNADPornithine N5-oxygenaseSerineAspergillusC4a-hydroperoxyflavinFlavinFlavin-dependent MonooxygenaseMolecular DynamicsMutagenesisNADP(H) RoleN-HydroxylatingSidASiderophores

Identifiers

PMID24072704
PMCPMC3820879

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.