Evidence map›Paper›PMID 24072327›Full record

ArticlePlant molecular biology2014

Linkage mapping, molecular cloning and functional analysis of soybean gene Fg2 encoding flavonol 3-O-glucoside (1 → 6) rhamnosyltransferase.

Felipe Rojas Rodas, Tito O Rodriguez, Yoshinori Murai, Tsukasa Iwashina, Satoko Sugawara, Makoto Suzuki, Ryo Nakabayashi, Keiko Yonekura-Sakakibara, Kazuki Saito, Junichi Kitajima and 2 more

Abstract read
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Article in Plant molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Development of phytochemical genomics: From decoding metabolome to functional genomics and biotechnology of plant metabolism.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
  7. Article
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  9. Article
  10. Article
  11. Article
  12. Article
  13. The Sweet Side of Plant-Specialized Metabolism.Cold Spring Harbor perspectives in biology · 2019
    Review
  14. Synthesis of Isorhamnetin-3-Molecules (Basel, Switzerland) · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Biosynthesis of two quercetin O-diglycosides in Escherichia coli.Journal of industrial microbiology & biotechnology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Felipe Rojas RodasGraduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8518, Japan.
Tito O Rodriguez
Yoshinori Murai
Tsukasa Iwashina
Satoko Sugawara
Makoto Suzuki
Ryo Nakabayashi
Keiko Yonekura-Sakakibara
Kazuki Saito
Junichi Kitajima
Kyoko Toda
Ryoji Takahashi
RIKEN Center for Sustainable Resource Science · JPInstitute of Crop Science · JPNational Museum of Nature and Science · JPUniversity of Tsukuba · JPShowa Pharmaceutical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There are substantial genotypic differences in the levels of flavonol glycosides (FGs) in soybean leaves. The first objective of this study was to identify and locate genes responsible for FG biosynthesis in the soybean genome. The second objective was to clone and verify the function of these candidate genes. Recombinant inbred lines (RILs) were developed by crossing the Kitakomachi and Koganejiro cultivars. The FGs were separated by high performance liquid chromatography (HPLC) and identified. The FGs of Koganejiro had rhamnose at the 6″-position of the glucose or galactose bound to the 3-position of kaempferol, whereas FGs of Kitakomachi were devoid of rhamnose. Among the 94 RILs, 53 RILs had HPLC peaks classified as Koganejiro type, and 41 RILs had peaks classified as Kitakomachi type. The segregation fitted a 1:1 ratio, suggesting that a single gene controls FG composition. SSR analysis, linkage mapping and genome database survey revealed a candidate gene in the molecular linkage group O (chromosome 10). The coding region of the gene from Koganejiro, designated as GmF3G6″Rt-a, is 1,392 bp long and encodes 464 amino acids, whereas the gene of Kitakomachi, GmF3G6″Rt-b, has a two-base deletion resulting in a truncated polypeptide consisting of 314 amino acids. The recombinant GmF3G6″Rt-a protein converted kaempferol 3-O-glucoside to kaempferol 3-O-rutinoside and utilized 3-O-glucosylated/galactosylated flavonols and UDP-rhamnose as substrates. GmF3G6″Rt-b protein had no activity. These results indicate that GmF3G6″Rt encodes a flavonol 3-O-glucoside (1 → 6) rhamnosyltransferase and it probably corresponds to the Fg2 gene. GmF3G6″Rt was designated as UGT79A6 by the UGT Nomenclature Committee.

Indexed as

Chromosome MappingGenes, PlantAmino Acid SequenceBase SequenceChromatography, High Pressure LiquidCloning, MolecularDNA, ComplementaryDNA PrimersGene Expression Regulation, PlantGlycine maxHexosyltransferasesMolecular Sequence DataRecombinant ProteinsSequence Homology, Amino AcidSoybean ProteinsDNA, ComplementaryDNA Primersflavonol 3-O-glucoside (1-6) rhamnosyltransferase, soybeanHexosyltransferasesRecombinant ProteinsSoybean Proteins

Identifiers

PMID24072327
OpenAlexW1964664557

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.