Evidence map›Paper›PMID 24068965›Full record

ArticlePLoS genetics2013

Mitochondrial transcription terminator family members mTTF and mTerf5 have opposing roles in coordination of mtDNA synthesis.

Priit Jõers, Samantha C Lewis, Atsushi Fukuoh, Mikael Parhiala, Simo Ellilä, Ian J Holt, Howard T Jacobs

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. The mitochondrial R-loop.Nucleic acids research · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Evolution of the metazoan mitochondrial replicase.Genome biology and evolution · 2015
    Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 5 countries.

Priit JõersInstitute of Biomedical Technology and Tampere University Hospital, Tampere, Finland ; Estonian Biocentre, Tartu, Estonia.
Samantha C Lewis
Atsushi Fukuoh
Mikael Parhiala
Simo Ellilä
Ian J Holt
Howard T Jacobs
Tampere University · FITampere University Hospital · FIMRC London Institute of Medical Sciences · GB

Funding

Medical Research Council MC_U105663140Medical Research Council MC_UP_1202/14
6 · The paper itself

Abstract

All genomes require a system for avoidance or handling of collisions between the machineries of DNA replication and transcription. We have investigated the roles in this process of the mTERF (mitochondrial transcription termination factor) family members mTTF and mTerf5 in Drosophila melanogaster. The two mTTF binding sites in Drosophila mtDNA, which also bind mTerf5, were found to coincide with major sites of replication pausing. RNAi-mediated knockdown of either factor resulted in mtDNA depletion and developmental arrest. mTTF knockdown decreased site-specific replication pausing, but led to an increase in replication stalling and fork regression in broad zones around each mTTF binding site. Lagging-strand DNA synthesis was impaired, with extended RNA/DNA hybrid segments seen in replication intermediates. This was accompanied by the accumulation of recombination intermediates and nicked/broken mtDNA species. Conversely, mTerf5 knockdown led to enhanced replication pausing at mTTF binding sites, a decrease in fragile replication intermediates containing single-stranded segments, and the disappearance of species containing segments of RNA/DNA hybrid. These findings indicate an essential and previously undescribed role for proteins of the mTERF family in the integration of transcription and DNA replication, preventing unregulated collisions and facilitating productive interactions between the two machineries that are inferred to be essential for completion of lagging-strand DNA synthesis.

Indexed as

Transcription, GeneticAnimalsBinding SitesDNA-Binding ProteinsDNA, MitochondrialDNA ReplicationDrosophila melanogasterDrosophila ProteinsGene Knockdown TechniquesMitochondriaMitochondrial ProteinsRNATranscription FactorsDNA-Binding ProteinsDNA, MitochondrialDrosophila ProteinsMitochondrial Proteinsmitochondrial transcription factor AmTerf5 protein, DrosophilaRNATranscription Factors

Identifiers

PMID24068965
PMCPMC3778013
OpenAlexW2007296746

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.