Evidence map›Paper›PMID 24068323›Full record

ArticleMolecular biology of the cell2013

A deubiquitinase negatively regulates retro-translocation of nonubiquitinated substrates.

Kaleena M Bernardi, Jeffrey M Williams, Takamasa Inoue, Aric Schultz, Billy Tsai

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Crosstalk Between Mammalian Autophagy and the Ubiquitin-Proteasome System.Frontiers in cell and developmental biology · 2018
    Review
  12. Article
  13. Review
  14. Intracellular trafficking of bacterial toxins.Current opinion in cell biology · 2016
    Review
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kaleena M BernardiDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48103 Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109.
Jeffrey M Williams
Takamasa Inoue
Aric Schultz
Billy Tsai
University of Michigan · US

Funding

Mechanism of cholera toxin retro-translocationR01AI083252 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TSAI, BILLY · 2010 to 2014
$1.5M
NIAID NIH HHS R01 AI083252PHS HHS R01 083252-04
6 · The paper itself

Abstract

Endoplasmic reticulum (ER) membrane-bound E3 ubiquitin ligases promote ER-associated degradation (ERAD) by ubiquitinating a retro-translocated substrate that reaches the cytosol from the ER, targeting it to the proteasome for destruction. Recent findings implicate ERAD-associated deubiquitinases (DUBs) as positive and negative regulators during ERAD, reflecting the different consequences of deubiquitinating a substrate prior to proteasomal degradation. These observations raise the question of whether a DUB can control the fate of a nonubiquitinated ERAD substrate. In this study, we probed the role of the ERAD-associated DUB, YOD1, during retro-translocation of the nonubiquitinated cholera toxin A1 (CTA1) peptide, a critical intoxication step. Through combining knockdown, overexpression, and binding studies, we demonstrated that YOD1 negatively controls CTA1 retro-translocation, likely by deubiquitinating and inactivating ubiquitinated ERAD components that normally promote toxin retro-translocation. YOD1 also antagonizes the proteasomal degradation of nonglycosylated pro-α factor, a postulated nonubiquitinated yeast ERAD substrate, in mammalian cells. Our findings reveal that a cytosolic DUB exerts a negative function during retro-translocation of nonubiquitinated substrates, potentially by acting on elements of the ERAD machinery.

Indexed as

Cholera ToxinCytosolEndopeptidasesEndoplasmic ReticulumEndoplasmic Reticulum-Associated DegradationGene Expression RegulationHEK293 CellsHumansPeptidesProteasome Endopeptidase ComplexProtein PrecursorsProtein TransportProteolysisSignal TransductionThiolester HydrolasesUbiquitinCholera ToxinEndopeptidasesPeptidesProteasome Endopeptidase ComplexProtein PrecursorsThiolester HydrolasesUbiquitinUbiquitin-Protein LigasesYOD1 protein, human

Identifiers

PMID24068323
PMCPMC3826992
OpenAlexW2140073846

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.