Evidence map›Paper›PMID 24067966›Full record

ArticleJournal of virology2013

Genome scale evolution of myxoma virus reveals host-pathogen adaptation and rapid geographic spread.

Peter J Kerr, Matthew B Rogers, Adam Fitch, Jay V Depasse, Isabella M Cattadori, Alan C Twaddle, Peter J Hudson, David C Tscharke, Andrew F Read, Edward C Holmes and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  4. Review
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  8. The phylogenomics of evolving virus virulence.Nature reviews. Genetics · 2018
    Review
  9. Article
  10. Next step in the ongoing arms race between myxoma virus and wild rabbits in Australia is a novel disease phenotype.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  11. Article
  12. Article
  13. Evolutionary clash between myxoma virus and rabbit PKR in Australia.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Myxoma virus M156 is a specific inhibitor of rabbit PKR but contains a loss-of-function mutation in Australian virus isolates.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  15. Article
  16. Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Peter J KerrCSIRO Ecosystem Sciences, Canberra, Australian Capital Territory, Australia.
Matthew B Rogers
Adam Fitch
Jay V Depasse
Isabella M Cattadori
Alan C Twaddle
Peter J Hudson
David C Tscharke
Andrew F Read
Edward C Holmes
Elodie Ghedin
University of Pittsburgh · USPennsylvania State University · USAustralian National University · AUCenter for Disease Dynamics, Economics & Policy · USCommonwealth Scientific and Industrial Research Organisation · AUFogarty International Center · US

Funding

Genomic analysis of the canonical case of virulence evolution: Myxomatosis in AuR01AI093804 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI READ, ANDREW F. · 2012 to 2016
$2.7M
NIAID NIH HHS R01 AI093804
6 · The paper itself

Abstract

The evolutionary interplay between myxoma virus (MYXV) and the European rabbit (Oryctolagus cuniculus) following release of the virus in Australia in 1950 as a biological control is a classic example of host-pathogen coevolution. We present a detailed genomic and phylogeographic analysis of 30 strains of MYXV, including the Australian progenitor strain Standard Laboratory Strain (SLS), 24 Australian viruses isolated from 1951 to 1999, and three isolates from the early radiation in Britain from 1954 and 1955. We show that in Australia MYXV has spread rapidly on a spatial scale, with multiple lineages cocirculating within individual localities, and that both highly virulent and attenuated viruses were still present in the field through the 1990s. In addition, the detection of closely related virus lineages at sites 1,000 km apart suggests that MYXV moves freely in geographic space, with mosquitoes, fleas, and rabbit migration all providing means of transport. Strikingly, despite multiple introductions, all modern viruses appear to be ultimately derived from the original introductions of SLS. The rapidity of MYXV evolution was also apparent at the genomic scale, with gene duplications documented in a number of viruses. Duplication of potential virulence genes may be important in increasing the expression of virulence proteins and provides the basis for the evolution of novel functions. Mutations leading to loss of open reading frames were surprisingly frequent and in some cases may explain attenuation, but no common mutations that correlated with virulence or attenuation were identified.

Indexed as

Evolution, MolecularGenome, ViralHost-Pathogen InteractionsAdaptation, PhysiologicalAnimalsMolecular Sequence DataMyxoma virusPhylogenyPhylogeographyPoxviridae InfectionsRabbitsVirulence

Identifiers

PMID24067966
PMCPMC3838154
OpenAlexW2118605347

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.