Evidence map›Paper›PMID 24065816›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence.

Kelly Houston, Sarah M McKim, Jordi Comadran, Nicola Bonar, Ilze Druka, Nicola Uzrek, Elisa Cirillo, Justyna Guzy-Wrobelska, Nicholas C Collins, Claire Halpin and 4 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Accumulation of mutations in theMolecular breeding : new strategies in plant improvement · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. TheInternational journal of molecular sciences · 2022
    Article
  15. MicroRNA-resistant alleles ofScience advances · 2022
    Article
  16. Review
  17. Article
  18. A novel mutant allele at the Cleistogamy 1 locus in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  19. Article
  20. Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Kelly HoustonThe James Hutton Institute, Invergowrie, Dundee, Scotland DD2 5DE, United Kingdom.
Sarah M McKim
Jordi Comadran
Nicola Bonar
Ilze Druka
Nicola Uzrek
Elisa Cirillo
Justyna Guzy-Wrobelska
Nicholas C Collins
Claire Halpin
Mats Hansson
Christoph Dockter
Arnis Druka
Robbie Waugh

Funding

Biotechnology and Biological Sciences Research Council 0921Biotechnology and Biological Sciences Research Council BB/G016232/1
6 · The paper itself

Abstract

Within the cereal grasses, variation in inflorescence architecture results in a conspicuous morphological diversity that in crop species influences the yield of cereal grains. Although significant progress has been made in identifying some of the genes underlying this variation in maize and rice, in the temperate cereals, a group that includes wheat, barley, and rye, only the dosage-dependent and highly pleiotropic Q locus in hexaploid wheat has been molecularly characterized. Here we show that the characteristic variation in the density of grains along the inflorescence, or spike, of modern cultivated barley (Hordeum vulgare) is largely the consequence of a perturbed interaction between microRNA172 and its corresponding binding site in the mRNA of an APELATA2 (AP2)-like transcription factor, HvAP2. We used genome-wide association and biparental mapping to identify HvAP2. By comparing inflorescence development and HvAP2 transcript abundance in an extreme dense-spike mutant and its nearly isogenic WT line, we show that HvAP2 turnover driven by microRNA 172 regulates the length of a critical developmental window that is required for elongation of the inflorescence internodes. Our data indicate that this heterochronic change, an altered timing of developmental events caused by specific temporal variation in the efficiency of HvAP2 turnover, leads to the striking differences in the size and shape of the barley spike.

Indexed as

Base SequenceDNA PrimersFlowersGenome-Wide Association StudyHordeumMicroRNAsMicroscopy, Electron, ScanningMolecular Sequence DataPrincipal Component AnalysisReal-Time Polymerase Chain ReactionSeedsSequence AlignmentSequence Analysis, DNATranscription FactorsDNA PrimersMicroRNAsMirn172 microRNA, ArabidopsisTranscription Factorsgenome wide association scanheterochrony

Identifiers

PMID24065816
PMCPMC3799380

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.