Evidence map›Paper›PMID 24065112›Full record

ArticleEuropean journal of human genetics : EJHG2014

Copy number variants in patients with short stature.

Hermine A van Duyvenvoorde, Julian C Lui, Sarina G Kant, Wilma Oostdijk, Antoinet C J Gijsbers, Mariëtte J V Hoffer, Marcel Karperien, Marie J E Walenkamp, Cees Noordam, Paul G Voorhoeve and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 75 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Novel homozygousInternational journal of ophthalmology · 2023
    Article
  8. A Genetic Approach in the Evaluation of Short Stature.The Eurasian journal of medicine · 2022
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Focused Revision: ACMG practice resource: Genetic evaluation of short stature.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. ADAMTS proteins in human disorders.Matrix biology : journal of the International Society for Matrix Biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 3 countries.

Hermine A van Duyvenvoorde1] Department of Pediatrics, Leiden University Medical Center, Leiden, The Netherlands [2] Department of Endocrinology and Metabolic Diseases, Leiden University Medical Center, Leiden, The Netherlands [3] Department of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Julian C LuiSection on Growth and Development, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD, USA.
Sarina G KantDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Wilma OostdijkDepartment of Pediatrics, Leiden University Medical Center, Leiden, The Netherlands.
Antoinet C J GijsbersDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Mariëtte J V HofferDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Marcel KarperienDepartment of Developmental BioEngineering, MIRA Institute for Biomedical Technology and Technical Medicine, University of Twente, Enschede, The Netherlands.
Marie J E WalenkampDepartment of Pediatrics, VU University Medical Center, Amsterdam, The Netherlands.
Cees NoordamDepartment of Pediatrics, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Paul G VoorhoeveDepartment of Pediatrics, Canisius-Wilhelmina Hospital, Nijmegen, The Netherlands.
Verónica MericqInstitute of Maternal and Child Disease, University of Chile, Santiago, Chile.
Alberto M PereiraDepartment of Endocrinology and Metabolic Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Hedi L Claahsen-van de GrintenDepartment of Pediatrics, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Sandy A van GoolDepartment of Pediatrics, Leiden University Medical Center, Leiden, The Netherlands.
Martijn H BreuningDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Monique LosekootDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Jeffrey BaronSection on Growth and Development, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD, USA.
Claudia A L RuivenkampDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Jan M WitDepartment of Pediatrics, Leiden University Medical Center, Leiden, The Netherlands.
Leiden University Medical Center · NLEunice Kennedy Shriver National Institute of Child Health and Human Development · USRadboud University Nijmegen · NLAmsterdam UMC Location VUmc · NLCanisius-Wilhelmina Ziekenhuis · NLUniversity of Chile · CLUniversity of Twente · NL

Funding

Regulation Of Childhood GrowthZIAHD000640 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI BARON, JEFFREY · 2009 to 2025
$24.4M
6 · The paper itself

Abstract

Height is a highly heritable and classic polygenic trait. Recent genome-wide association studies (GWAS) have revealed that at least 180 genetic variants influence adult height. However, these variants explain only about 10% of the phenotypic variation in height. Genetic analysis of short individuals can lead to the discovery of novel rare gene defects with a large effect on growth. In an effort to identify novel genes associated with short stature, genome-wide analysis for copy number variants (CNVs), using single-nucleotide polymorphism arrays, in 162 patients (149 families) with short stature was performed. Segregation analysis was performed if possible, and genes in CNVs were compared with information from GWAS, gene expression in rodents' growth plates and published information. CNVs were detected in 40 families. In six families, a known cause of short stature was found (SHOX deletion or duplication, IGF1R deletion), in two combined with a de novo potentially pathogenic CNV. Thirty-three families had one or more potentially pathogenic CNVs (n=40). In 24 of these families, segregation analysis could be performed, identifying three de novo CNVs and nine CNVs segregating with short stature. Four were located near loci associated with height in GWAS (ADAMTS17, TULP4, PRKG2/BMP3 and PAPPA). Besides six CNVs known to be causative for short stature, 40 CNVs with possible pathogenicity were identified. Segregation studies and bioinformatics analysis suggested various potential candidate genes.

Indexed as

DNA Copy Number VariationsAnimalsComputational BiologyDwarfismGenetic Association StudiesGenome-Wide Association StudyGenomicsHumansMicePolymorphism, Single NucleotideRats

Identifiers

PMID24065112
PMCPMC3992565
OpenAlexW2132473139

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.