Evidence map›Paper›PMID 24065030›Full record

ArticleNature communications2013

Functional evaluation of autism-associated mutations in NHE9.

Kalyan C Kondapalli, Anniesha Hack, Maya Schushan, Meytal Landau, Nir Ben-Tal, Rajini Rao

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 102 citations in OpenAlex.

  1. Pooled it
  2. Ion transport as a determinant of membrane fusion and fission.Nature structural & molecular biology · 2026
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  9. Identification of tumor antigens and immune subtypes of acute myeloid leukemia for mRNA vaccine development.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2023
    Article
  10. Endosomal Acid-Base Homeostasis in Neurodegenerative Diseases.Reviews of physiology, biochemistry and pharmacology · 2023
    Article
  11. The Physiological Function and Potential Role of the Ubiquitous NaInternational journal of molecular sciences · 2022
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Decreased Brain pH and Pathophysiology in Schizophrenia.International journal of molecular sciences · 2021
    Review
  18. Article
  19. Article
  20. Emerging links between endosomal pH and cancer.Cancer metastasis reviews · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Kalyan C Kondapalli1] Department of Physiology, Johns Hopkins University School of Medicine, 725 North Wolfe Street, Baltimore, Maryland 21205, USA [2].
Anniesha Hack
Maya Schushan
Meytal Landau
Nir Ben-Tal
Rajini Rao
Johns Hopkins University · USTel Aviv University · ILTechnion – Israel Institute of Technology · IL

Funding

Training Program in Cellular and Molecular MedicineT32GM008752 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI RAO, RAJINI · 2000 to 2019
$11.7M
Endosomal Na+/H+ Exchangers From Yeast and Human: Role and RegulationR01DK054214 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI RAO, RAJINI · 1998 to 2011
$3.0M
NIDDK NIH HHS R01 DK054214NIGMS NIH HHS T32 GM008752
6 · The paper itself

Abstract

NHE9 (SLC9A9) is an endosomal cation/proton antiporter with orthologues in yeast and bacteria. Rare, missense substitutions in NHE9 are genetically linked with autism but have not been functionally evaluated. Here we use evolutionary conservation analysis to build a model structure of NHE9 based on the crystal structure of bacterial NhaA and use it to screen autism-associated variants in the human population first by phenotype complementation in yeast, followed by functional analysis in primary cortical astrocytes from mouse. NHE9-GFP localizes to recycling endosomes, where it significantly alkalinizes luminal pH, elevates uptake of transferrin and the neurotransmitter glutamate, and stabilizes surface expression of transferrin receptor and GLAST transporter. In contrast, autism-associated variants L236S, S438P and V176I lack function in astrocytes. Thus, we establish a neurobiological cell model of a candidate gene in autism. Loss-of-function mutations in NHE9 may contribute to autistic phenotype by modulating synaptic membrane protein expression and neurotransmitter clearance.

Indexed as

Amino Acid SequenceAnimalsAstrocytesAutistic DisorderCerebral CortexConserved SequenceEndosomesEscherichia coli ProteinsExcitatory Amino Acid Transporter 1Gene Expression RegulationGenetic Complementation TestGlutamic AcidHumansMiceModels, MolecularMolecular Sequence DataEscherichia coli ProteinsExcitatory Amino Acid Transporter 1Glutamic AcidNhaA protein, E coliNHE9 protein, mouseReceptors, TransferrinSlc1a3 protein, mouseSLC9A9 protein, humanSodium-Hydrogen Exchangers

Identifiers

PMID24065030
PMCPMC3815575
OpenAlexW1983379765

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.