Evidence map›Paper›PMID 24064926›Full record

ArticleJournal of experimental botany2013

Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both distinct and similar responses to cytokinin down- and up-regulation.

Martin Černý, Alena Kuklová, Wolfgang Hoehenwarter, Lena Fragner, Ondrej Novák, Gabriela Rotková, Petr L Jedelsky, Katerina Žáková, Mária Šmehilová, Miroslav Strnad and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 2 pooled it
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 2 syntheses or guidelines pooled it, 71 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Divergent Molecular Responses to Heavy Water inPlants (Basel, Switzerland) · 2024
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  7. Annotation of thePlants (Basel, Switzerland) · 2023
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  8. Article
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  10. Defective cytokinin signaling reprograms lipid and flavonoid gene-to-metabolite networks to mitigate high salinity inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Proteome-Wide Analysis of Heat-Stress inFrontiers in plant science · 2021
    Article
  15. Article
  16. Article
  17. Silencing ofInternational journal of molecular sciences · 2020
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Martin ČernýLaboratory of Plant Molecular Biology, Institute of Biophysics AS CR and CEITEC-Central European Institute of Technology, Mendel University in Brno, Zemědělská 1, CZ-613 00 Brno, Czech Republic.
Alena Kuklová
Wolfgang Hoehenwarter
Lena Fragner
Ondrej Novák
Gabriela Rotková
Petr L Jedelsky
Katerina Žáková
Mária Šmehilová
Miroslav Strnad
Wolfram Weckwerth
Bretislav Brzobohaty
Central European Institute of Technology · CZUniversity of Vienna · ATPalacký University Olomouc · CZCharles University · CZCzech Academy of Sciences · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants, numerous developmental processes are controlled by cytokinin (CK) levels and their ratios to levels of other hormones. While molecular mechanisms underlying the regulatory roles of CKs have been intensely researched, proteomic and metabolomic responses to CK deficiency are unknown. Transgenic Arabidopsis seedlings carrying inducible barley cytokinin oxidase/dehydrogenase (CaMV35S>GR>HvCKX2) and agrobacterial isopentenyl transferase (CaMV35S>GR>ipt) constructs were profiled to elucidate proteome- and metabolome-wide responses to down- and up-regulation of CK levels, respectively. Proteome profiling identified >1100 proteins, 155 of which responded to HvCKX2 and/or ipt activation, mostly involved in growth, development, and/or hormone and light signalling. The metabolome profiling covered 79 metabolites, 33 of which responded to HvCKX2 and/or ipt activation, mostly amino acids, carbohydrates, and organic acids. Comparison of the data sets obtained from activated CaMV35S>GR>HvCKX2 and CaMV35S>GR>ipt plants revealed unexpectedly extensive overlaps. Integration of the proteomic and metabolomic data sets revealed: (i) novel components of molecular circuits involved in CK action (e.g. ribosomal proteins); (ii) previously unrecognized links to redox regulation and stress hormone signalling networks; and (iii) CK content markers. The striking overlaps in profiles observed in CK-deficient and CK-overproducing seedlings might explain surprising previously reported similarities between plants with down- and up-regulated CK levels.

Indexed as

Alkyl and Aryl TransferasesArabidopsisArabidopsis ProteinsChromatography, LiquidCytokininsDexamethasoneGene Expression Regulation, PlantHordeumMass SpectrometryMetabolomeMetabolomicsPlants, Genetically ModifiedProteomeProteomicsSeedlingsUp-Regulationadenylate isopentenyltransferaseAlkyl and Aryl TransferasesArabidopsis ProteinsCytokininsDexamethasoneProteomeArabidopsis thalianacytokinincytokinin oxidase/dehydrogenaseisopentenyl transferasemetabolomeproteome.

Identifiers

PMID24064926
PMCPMC3808309
OpenAlexW2127451427

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.