ArticleG3 (Bethesda, Md.)2013
Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps.
Article in G3 (Bethesda, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers.
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Who cites it
139 citing papers in PubMed.
- Development and regulatory approval of Kal91.3: combining advanced conventional breeding with genetic engineering to create a cold sweetening‑resistant chip‑processing potato.GM crops & food · 2026Article
- Genome-wide association studies and genomics-informed breeding for tuber dormancy in tetraploid potatoes.The plant genome · 2026Article
- The potato cyst nematode Globodera pallida overcomes major potato resistance through selection on standing variation at a single locus.The New phytologist · 2026Article
- Light spectrum modulates stress and defense gene expression in potato (Solanum tuberosum L.) shoot tips during post-cryopreservation recovery.Scientific reports · 2025Article
- Phylogenomic and super-pangenome analyses unveil the genetic landscape of tomato evolution and domestication.Plant biotechnology journal · 2025Article
- Getting help from the extended family: identification and genetic characterisation of novel resistance toMolecular breeding : new strategies in plant improvement · 2025Article
- Chromosome-level genome assembly and annotation of Petunia hybrida.Scientific data · 2025Article
- Transcriptomic and metabolomic profiling of the potato plant response to zebra chip disease.PloS one · 2025Article
- Diploid inbred-based hybrids: fast-forward breeding approach in potatoes.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024Review
- Genotyping-by-sequencing targets genic regions and improves resolution of genome-wide association studies in autotetraploid potato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Identification, Elucidation and Deployment of a Cytoplasmic Male Sterility System for Hybrid Potato.Biology · 2024Article
- Characterisation and mapping of a Globodera pallida resistance derived from the wild potato species Solanum spegazzinii.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Transcriptome Analysis Reveals Novel Genes Potentially Involved in Tuberization in Potato.Plants (Basel, Switzerland) · 2024Article
- Construction of relatedness matrices in autopolyploid populations using low-depth high-throughput sequencing data.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- To be or not to be tetraploid-the impact of marker ploidy on genomic prediction and GWAS of potato.Frontiers in plant science · 2024Article
- QTL identified that influence tuber length-width ratio, degree of flatness, tuber size, and specific gravity in a russet-skinned, tetraploid mapping population.Frontiers in plant science · 2024Article
- The effect of marker types and density on genomic prediction and GWAS of key performance traits in tetraploid potato.Frontiers in plant science · 2024Article
- Revitalizing agriculture: next-generation genotyping and -omics technologies enabling molecular prediction of resilient traits in the Solanaceae family.Frontiers in plant science · 2024Review
- Potato and sweetpotato breeding at the international potato center: approaches, outcomes and the way forward.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Review
- Transcriptomic Analyses Reveal the Role of Cytokinin and the Nodal Stem in Microtuber Sprouting in Potato (International journal of molecular sciences · 2023Article
79 more citing papers are in PubMed but not listed here.
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Authors and funding
45 authors.
Funding
Abstract
The genome of potato, a major global food crop, was recently sequenced. The work presented here details the integration of the potato reference genome (DM) with a new sequence-tagged site marker-based linkage map and other physical and genetic maps of potato and the closely related species tomato. Primary anchoring of the DM genome assembly was accomplished by the use of a diploid segregating population, which was genotyped with several types of molecular genetic markers to construct a new ~936 cM linkage map comprising 2469 marker loci. In silico anchoring approaches used genetic and physical maps from the diploid potato genotype RH89-039-16 (RH) and tomato. This combined approach has allowed 951 superscaffolds to be ordered into pseudomolecules corresponding to the 12 potato chromosomes. These pseudomolecules represent 674 Mb (~93%) of the 723 Mb genome assembly and 37,482 (~96%) of the 39,031 predicted genes. The superscaffold order and orientation within the pseudomolecules are closely collinear with independently constructed high density linkage maps. Comparisons between marker distribution and physical location reveal regions of greater and lesser recombination, as well as regions exhibiting significant segregation distortion. The work presented here has led to a greatly improved ordering of the potato reference genome superscaffolds into chromosomal "pseudomolecules".
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