Evidence map›Paper›PMID 24062455›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota.

Purna C Kashyap, Angela Marcobal, Luke K Ursell, Samuel A Smits, Erica D Sonnenburg, Elizabeth K Costello, Steven K Higginbottom, Steven E Domino, Susan P Holmes, David A Relman and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 166 papers.

0numbers the graph read from it
0cells of the map it votes in
166citing papers in PubMed
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

166 citing papers in PubMed, 282 citations in OpenAlex.

  1. Trial
  2. Gut microbes · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Requirement for Fucosyltransferase 2 in Allergic Airway Hyperreactivity and Mucus Obstruction.American journal of respiratory cell and molecular biology · 2025
    Article
  14. Biomedicines · 2025
    Article
  15. Article
  16. Article
  17. Translational evaluation of GelsectanUnited European gastroenterology journal · 2024
    Article
  18. Article
  19. Review
  20. Article

106 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Purna C KashyapDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305.
Angela Marcobal
Luke K Ursell
Samuel A Smits
Erica D Sonnenburg
Elizabeth K Costello
Steven K Higginbottom
Steven E Domino
Susan P Holmes
David A Relman
Rob Knight
Jeffrey I Gordon
Justin L Sonnenburg
Stanford University · USUniversity of Colorado Boulder · USUniversity of Michigan–Ann Arbor · USVA Palo Alto Health Care System · USWashington University in St. Louis · US

Funding

PILOT AND FEASIBILTY PROGRAMP30DK084567 · NIDDK · MAYO CLINIC ROCHESTER · PI GREGORY J. GORES · 2009 to 2026
$22.2M
REGULATION OF GENE EXPRESSION - SMALL INTESTINER01DK030292 · NIDDK · WASHINGTON UNIVERSITY · PI JEFFREY I GORDON, ANDREI L OSTERMAN · 1986 to 2026
$6.5M
Impact of Diet on Intestinal Microbiota-Host DynamicsR01DK085025 · NIDDK · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 2010 to 2026
$6.4M
TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
REGULATION OF GENE EXPRESSION IN THE SMALL INTESTINER37DK030292 · NIDDK · WASHINGTON UNIVERSITY · PI GORDON, JEFFREY I · 1993 to 2015
$4.0M
Predoctoral Training Program in Signaling and Cellular Regulation INCLUDE Down Syndrome SupplementT32GM142607 · NIGMS · UNIVERSITY OF COLORADO · PI Sabrina Leigh Spencer, Tin Tin Su · 2021 to 2026
$3.6M
NIH Director's Pioneer AwardDP1OD000964 · OD · STANFORD UNIVERSITY · PI RELMAN, DAVID A. · 2006 to 2010
$3.4M
Heterogeneous in situ data: Kernals, Distances and TreesR01GM086884 · NIGMS · STANFORD UNIVERSITY · PI HOLMES, SUSAN P · 2008 to 2011
$895k
Howard Hughes Medical InstituteNIDDK NIH HHS DK085025NIDDK NIH HHS DK30292NIDDK NIH HHS P30 DK084567NIDDK NIH HHS R01 DK030292NIDDK NIH HHS R01 DK085025NIDDK NIH HHS R37 DK030292NIGMS NIH HHS GM86884NIGMS NIH HHS R01 GM086884NIGMS NIH HHS T32 GM008759NIGMS NIH HHS T32 GM142607NIH HHS DP1 OD000964NIH HHS DP1OD000964
6 · The paper itself

Abstract

We investigate how host mucus glycan composition interacts with dietary carbohydrate content to influence the composition and expressed functions of a human gut community. The humanized gnotobiotic mice mimic humans with a nonsecretor phenotype due to knockout of their α1-2 fucosyltransferase (Fut2) gene. The fecal microbiota of Fut2(-) mice that lack fucosylated host glycans show decreased alpha diversity relative to Fut2(+) mice and exhibit significant differences in community composition. A glucose-rich plant polysaccharide-deficient (PD) diet exerted a strong effect on the microbiota membership but eliminated the effect of Fut2 genotype. Additionally fecal metabolites predicted host genotype in mice on a polysaccharide-rich standard diet but not on a PD diet. A more detailed mechanistic analysis of these interactions involved colonization of gnotobiotic Fut2(+) and Fut2(-) mice with Bacteroides thetaiotaomicron, a prominent member of the human gut microbiota known to adaptively forage host mucosal glycans when dietary polysaccharides are absent. Within Fut2(-) mice, the B. thetaiotaomicron fucose catabolic pathway was markedly down-regulated, whereas BT4241-4247, an operon responsive to terminal β-galactose, the precursor that accumulates in the Fut2(-) mice, was significantly up-regulated. These changes in B. thetaiotaomicron gene expression were only evident in mice fed a PD diet, wherein B. thetaiotaomicron relies on host mucus consumption. Furthermore, up-regulation of the BT4241-4247 operon was also seen in humanized Fut2(-) mice. Together, these data demonstrate that differences in host genotype that affect the carbohydrate landscape of the distal gut interact with diet to alter the composition and function of resident microbes in a diet-dependent manner.

Indexed as

FucosyltransferasesGlucansAnimalsBacteroidesDietary CarbohydratesGalactoside 2-alpha-L-fucosyltransferaseHumansIntestinal MucosaMiceMice, KnockoutMicrobiotaDietary CarbohydratesFucosyltransferasesGalactoside 2-alpha-L-fucosyltransferaseGlucanshost–microbial mutualismintestinal microbiotametabolomics

Identifiers

PMID24062455
PMCPMC3800993
OpenAlexW1989848555

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.