Evidence map›Paper›PMID 24062307›Full record

ArticleThe Journal of biological chemistry2013

Diversity of Δ12 fatty acid desaturases in santalaceae and their role in production of seed oil acetylenic fatty acids.

Shoko Okada, Xue-Rong Zhou, Katherine Damcevski, Nerida Gibb, Craig Wood, Mats Hamberg, Victoria S Haritos

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. ThePlant physiology · 2020
    Article
  5. Article
  6. Article
  7. Seeds as oil factories.Plant reproduction · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Shoko OkadaFrom the Commonwealth Scientific and Industrial Research Organization (CSIRO) Ecosystem Sciences, GPO Box 1700, Canberra, Australian Capital Territory 2601, Australia.
Xue-Rong Zhouthe CSIRO Plant Industry, GPO Box 1600, Canberra, Australian Capital Territory 2601, Australia.
Katherine DamcevskiFrom the Commonwealth Scientific and Industrial Research Organization (CSIRO) Ecosystem Sciences, GPO Box 1700, Canberra, Australian Capital Territory 2601, Australia.
Nerida GibbFrom the Commonwealth Scientific and Industrial Research Organization (CSIRO) Ecosystem Sciences, GPO Box 1700, Canberra, Australian Capital Territory 2601, Australia.
Craig Woodthe CSIRO Plant Industry, GPO Box 1600, Canberra, Australian Capital Territory 2601, Australia.
Mats HambergDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 77 Stockholm, Sweden.
Victoria S HaritosFrom the Commonwealth Scientific and Industrial Research Organization (CSIRO) Ecosystem Sciences, GPO Box 1700, Canberra, Australian Capital Territory 2601, Australia,. Electronic address: victoria.haritos@csiro.au.
Plant Industry · AUKarolinska Institutet · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants in the Santalaceae family, including the native cherry Exocarpos cupressiformis and sweet quandong Santalum acuminatum, accumulate ximenynic acid (trans-11-octadecen-9-ynoic acid) in their seed oil and conjugated polyacetylenic fatty acids in root tissue. Twelve full-length genes coding for microsomal Δ12 fatty acid desaturases (FADs) from the two Santalaceae species were identified by degenerate PCR. Phylogenetic analysis of the predicted amino acid sequences placed five Santalaceae FADs with Δ12 FADs, which include Arabidopsis thaliana FAD2. When expressed in yeast, the major activity of these genes was Δ12 desaturation of oleic acid, but unusual activities were also observed: i.e. Δ15 desaturation of linoleic acid as well as trans-Δ12 and trans-Δ11 desaturations of stearolic acid (9-octadecynoic acid). The trans-12-octadecen-9-ynoic acid product was also detected in quandong seed oil. The two other FAD groups (FADX and FADY) were present in both species; in a phylogenetic tree of microsomal FAD enzymes, FADX and FADY formed a unique clade, suggesting that are highly divergent. The FADX group enzymes had no detectable Δ12 FAD activity but instead catalyzed cis-Δ13 desaturation of stearolic acid when expressed in yeast. No products were detected for the FADY group when expressed recombinantly. Quantitative PCR analysis showed that the FADY genes were expressed in leaf rather than developing seed of the native cherry. FADs with promiscuous and unique activities have been identified in Santalaceae and explain the origin of some of the unusual lipids found in this plant family.

Indexed as

AlkynesFatty Acid DesaturasesFatty Acids, UnsaturatedGene Expression Regulation, EnzymologicGene Expression Regulation, PlantPlant LeavesPlant OilsPlant ProteinsRecombinant ProteinsSaccharomyces cerevisiaeSantalaceaeSeeds2-hexadecynoic acidAlkynesFatty Acid DesaturasesFatty Acids, UnsaturatedPlant OilsPlant ProteinsRecombinant ProteinsEnzyme CatalysisGene ExpressionLipidsMembrane EnzymesPhylogeneticsPolyunsaturated Fatty Acids

Identifiers

PMID24062307
PMCPMC3820875
OpenAlexW2036311988

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.