Evidence map›Paper›PMID 24060536›Full record

Trial reportJournal of immunological methods2013

A real-time killing assay to follow viral epitope presentation to CD8 T cells.

Pauline Gourdain, Julie Boucau, Georgio Kourjian, Nicole Y Lai, Ellen Duong, Sylvie Le Gall

Abstract readClinical Trial
In one paragraph

Trial report in Journal of immunological methods, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Sequence-specific alterations of epitope production by HIV protease inhibitors.Journal of immunology (Baltimore, Md. : 1950) · 2014
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Pauline GourdainRagon Institute of MGH, MIT and Harvard, Massachusetts General Hospital, Harvard Medical School, Cambridge, MA, USA.
Julie Boucau
Georgio Kourjian
Nicole Y Lai
Ellen Duong
Sylvie Le Gall
Harvard University · USRagon Institute of MGH, MIT and Harvard · US

Funding

Mechanisms and optimization of epitope presentation by HIV-infectable cell subsetR01AI084753 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI LE GALL, SYLVIE · 2009 to 2013
$2.3M
Immune responses against HIV-induced cell-derived neoepitopes and HIV controlR01AI084106 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI LE GALL, SYLVIE · 2009 to 2012
$2.1M
NIAID NIH HHS R01 AI084106NIAID NIH HHS R01 AI084753PHS HHS A1084106PHS HHS A1084753
6 · The paper itself

Abstract

The ability of cytotoxic T lymphocytes (CTL) to clear virus-infected cells requires the presentation of viral peptides intracellularly processed and displayed by major histocompatibility complex class I. Assays to measure CTL-mediated killing often use peptides exogenously added onto target cells--which does not account for epitope processing--or follow killing of infected cells at a single time point. In this study we established a real-time fluorogenic cytotoxic assay that measures the release of the Glucose-6-phosphate-dehydrogenase by dying target cells every 5 min after addition of CTL. It has comparable sensitivity to (51)chromium-based killing assay with the additional advantage of incorporating the kinetics of epitope presentation. We showed that HIV infection of immortalized or primary CD4 T cells leads to asynchronous killing by two CTL clones specific for epitopes located in different proteins. Real-time monitoring of killing of virus-infected cells will enable identification of immune responses efficiently preventing virus dissemination.

Indexed as

Antigen PresentationCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCell Line, TransformedEpitopes, T-LymphocyteFemaleGlucosephosphate DehydrogenaseHIV-1HIV InfectionsHumansMaleEpitopes, T-LymphocyteGlucosephosphate Dehydrogenase7-AAD7-amino-actinomycin DAntigen processingcalceinacetoxymethylesterCAMcarboxyfluorescein succinimidyl esterCD8 T cellsCFSECytotoxicityG6PDHglucose 6-phosphate dehydrogenaseHIVKineticsMitoTrackerGreenMTGReal-time killing assay

Identifiers

PMID24060536
PMCPMC3845008
OpenAlexW1972778506

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.