ArticleBMC plant biology2013
Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing.
Article in BMC plant biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.
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132 citing papers in PubMed.
- Research on the mining of candidate genes for pepper fruit color and development of SNP markers based on SLAF-seq technology.Scientific reports · 2025Article
- SLAF-seq technology-based genome-wide association and population structure analyses of hot pepper and sweet pepper.BMC genomics · 2025Article
- Construction of a high-density genetic map based on large-scale marker development in Coix lacryma-jobi L. using specific-locus amplified fragment sequencing (slaf-seq).Scientific reports · 2024Article
- Genetic linkage map construction and QTL analysis for plant height in proso millet (Panicum miliaceum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Article
- High-density genetic map construction and QTL mapping to identify genes for blight defense- and yield-related traits in sesame (Frontiers in plant science · 2024Article
- Multi-environment QTL mapping identifies major genetic loci influencing soybean main stem node architecture.PeerJ · 2024Article
- A High-Resolution Linkage Map Construction and QTL Analysis for Morphological Traits in Anthurium (Plants (Basel, Switzerland) · 2023Article
- Omics technologies towards sesame improvement: a review.Molecular biology reports · 2023Review
- Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic Improvement.International journal of molecular sciences · 2023Review
- Article
- Candidate powdery mildew resistance gene in wheat landrace cultivar Hongyoumai discovered using SLAF and BSR-seq.BMC plant biology · 2022Article
- QTL mapping for growth-related traits by constructing the first genetic linkage map in Simao pine.BMC plant biology · 2022Article
- Investigation of genetic relationships within three Miscanthus species using SNP markers identified with SLAF-seq.BMC genomics · 2022Article
- Discovering favorable genes, QTLs, and genotypes as a genetic resource for sesame (Frontiers in genetics · 2022Review
- Identification and validation of quantitative trait loci for chlorophyll content of flag leaf in wheat under different phosphorus treatments.Frontiers in plant science · 2022Article
- Construction of High-Density Genetic Map and Identification of a Bruchid Resistance Locus in Mung Bean (Frontiers in genetics · 2022Article
- QTLs Identification for Iron Chlorosis in a Segregating Peach-Almond Progeny Through Double-Digest Sequence-Based Genotyping (SBG).Frontiers in plant science · 2022Article
- Population genetics analysis of Tolai hares (Frontiers in genetics · 2022Article
- Germplasm Resources and Strategy for Genetic Breeding ofFrontiers in plant science · 2022Review
72 more citing papers are in PubMed but not listed here.
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8 authors.
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No grant is acknowledged in the PubMed record.
Abstract
backgroundThe genetics and molecular biology of sesame has only recently begun to be studied even though sesame is an important oil seed crop. A high-density genetic map for sesame has not been published yet due to a lack of sufficient molecular markers. Specific length amplified fragment sequencing (SLAF-seq) is a recently developed high-resolution strategy for large-scale de novo SNP discovery and genotyping. SLAF-seq was employed in this study to obtain sufficient markers to construct a high-density genetic map for sesame.
resultsIn total, 28.21 Gb of data containing 201,488,285 pair-end reads was obtained after sequencing. The average coverage for each SLAF marker was 23.48-fold in the male parent, 23.38-fold in the female parent, and 14.46-fold average in each F2 individual. In total, 71,793 high-quality SLAFs were detected of which 3,673 SLAFs were polymorphic and 1,272 of the polymorphic markers met the requirements for use in the construction of a genetic map. The final map included 1,233 markers on the 15 linkage groups (LGs) and was 1,474.87 cM in length with an average distance of 1.20 cM between adjacent markers. To our knowledge, this map is the densest genetic linkage map to date for sesame. 'SNP_only' markers accounted for 87.51% of the markers on the map. A total of 205 markers on the map showed significant (P < 0.05) segregation distortion.
conclusionsWe report here the first high-density genetic map for sesame. The map was constructed using an F2 population and the SLAF-seq approach, which allowed the efficient development of a large number of polymorphic markers in a short time. Results of this study will not only provide a platform for gene/QTL fine mapping, map-based gene isolation, and molecular breeding for sesame, but will also serve as a reference for positioning sequence scaffolds on a physical map, to assist in the process of assembling the sesame genome sequence.
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