Evidence map›Paper›PMID 24057674›Full record

ArticleHuman molecular genetics2014

Rare missense variants in CHRNB3 and CHRNA3 are associated with risk of alcohol and cocaine dependence.

Gabe Haller, Manav Kapoor, John Budde, Xiaoling Xuei, Howard Edenberg, John Nurnberger, John Kramer, Andy Brooks, Jay Tischfield, Laura Almasy and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 2 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 2 syntheses or guidelines pooled it, 43 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
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  6. Genes and Longevity of Lifespan.International journal of molecular sciences · 2022
    Review
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  17. Associations of rare nicotinic cholinergic receptor gene variants to nicotine and alcohol dependence.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2016
    Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Gabe HallerDepartment of Psychiatry and.
Manav Kapoor
John Budde
Xiaoling Xuei
Howard Edenberg
John Nurnberger
John Kramer
Andy Brooks
Jay Tischfield
Laura Almasy
Arpana Agrawal
Kathleen Bucholz
John Rice
Nancy Saccone
Laura Bierut
Alison Goate
Washington University in St. Louis · USIndiana University School of MedicineRutgers, The State University of New Jersey · USIndiana University – Purdue University Indianapolis · USTexas Biomedical Research Institute · USUniversity of Iowa · US

Funding

Subject CollectionU10AA008401 · NIAAA · SUNY DOWNSTATE MEDICAL CENTER · PI JESSICA E SALVATORE · 1989 to 2026
$162.7M
The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2001 to 2012
$17.3M
NCI NIH HHS P01 CA089392NCI NIH HHS P01 CA89392NIAAA NIH HHS U10 AA008401NIAAA NIH HHS U10AA008401PHS HHS HHSN271200477451C
6 · The paper itself

Abstract

Previous findings have demonstrated that variants in nicotinic receptor genes are associated with nicotine, alcohol and cocaine dependence. Because of the substantial comorbidity, it has often been unclear whether a variant is associated with multiple substances or whether the association is actually with a single substance. To investigate the possible contribution of rare variants to the development of substance dependencies other than nicotine dependence, specifically alcohol and cocaine dependence, we undertook pooled sequencing of the coding regions and flanking sequence of CHRNA5, CHRNA3, CHRNB4, CHRNA6 and CHRNB3 in 287 African American and 1028 European American individuals from the Collaborative Study of the Genetics of Alcoholism (COGA). All members of families for whom any individual was sequenced (2504 African Americans and 7318 European Americans) were then genotyped for all variants identified by sequencing. For each gene, we then tested for association using FamSKAT. For European Americans, we find increased DSM-IV cocaine dependence symptoms (FamSKAT P = 2 × 10(-4)) and increased DSM-IV alcohol dependence symptoms (FamSKAT P = 5 × 10(-4)) among carriers of missense variants in CHRNB3. Additionally, one variant (rs149775276; H329Y) shows association with both cocaine dependence symptoms (P = 7.4 × 10(-5), β = 2.04) and alcohol dependence symptoms (P = 2.6 × 10(-4), β = 2.04). For African Americans, we find decreased cocaine dependence symptoms among carriers of missense variants in CHRNA3 (FamSKAT P = 0.005). Replication in an independent sample supports the role of rare variants in CHRNB3 and alcohol dependence (P = 0.006). These are the first results to implicate rare variants in CHRNB3 or CHRNA3 in risk for alcohol dependence or cocaine dependence.

Indexed as

Polymorphism, Single NucleotideBlack or African AmericanCase-Control StudiesCocaine-Related DisordersGene FrequencyGenetic Predisposition to DiseaseHumansNerve Tissue ProteinsReceptors, NicotinicTobacco Use DisorderWhite PeopleCHRNA5 protein, humanCHRNA6 protein, humanCHRNB3 protein, humanCHRNB4 protein, humanNerve Tissue ProteinsReceptors, Nicotinic

Identifiers

PMID24057674
PMCPMC3888263
OpenAlexW2162967253

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.