Evidence map›Paper›PMID 24056301›Full record

ArticleNature cell biology2013

The deubiquitylase USP33 discriminates between RALB functions in autophagy and innate immune response.

Michal Simicek, Sam Lievens, Mathias Laga, Dmytro Guzenko, Vasily N Aushev, Peter Kalev, Maria Francesca Baietti, Sergei V Strelkov, Kris Gevaert, Jan Tavernier and 1 more

Abstract read
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In one paragraph

Article in Nature cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 99 citations in OpenAlex.

  1. Review
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  3. Observational
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  14. Spatial Mechano-Signaling Regulation of GTPases through Non-Degradative Ubiquitination.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  15. Review
  16. A review of deubiquitinases and thier roles in tumorigenesis and development.Frontiers in bioengineering and biotechnology · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Michal Simicek1] VIB Center for the Biology of Disease, VIB, 3000 Leuven, Belgium [2] Department of Human Genetics, KU Leuven, Herestraat 49, 3000 Leuven, Belgium.
Sam Lievens
Mathias Laga
Dmytro Guzenko
Vasily N Aushev
Peter Kalev
Maria Francesca Baietti
Sergei V Strelkov
Kris Gevaert
Jan Tavernier
Anna A Sablina
KU Leuven · BEGhent University · BEVIB-UGent Center for Medical Biotechnology · BERussian Cancer Research Center NN Blokhin · RUVIB-KU Leuven Center for Cancer Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The RAS-like GTPase RALB mediates cellular responses to nutrient availability or viral infection by respectively engaging two components of the exocyst complex, EXO84 and SEC5. RALB employs SEC5 to trigger innate immunity signalling, whereas RALB-EXO84 interaction induces autophagocytosis. How this differential interaction is achieved molecularly by the RAL GTPase remains unknown. We found that whereas GTP binding turns on RALB activity, ubiquitylation of RALB at Lys 47 tunes its activity towards a particular effector. Specifically, ubiquitylation at Lys 47 sterically inhibits RALB binding to EXO84, while facilitating its interaction with SEC5. Double-stranded RNA promotes RALB ubiquitylation and SEC5-TBK1 complex formation. In contrast, nutrient starvation induces RALB deubiquitylation by accumulation and relocalization of the deubiquitylase USP33 to RALB-positive vesicles. Deubiquitylated RALB promotes the assembly of the RALB-EXO84-beclin-1 complexes driving autophagosome formation. Thus, ubiquitylation within the effector-binding domain provides the switch for the dual functions of RALB in autophagy and innate immune responses.

Indexed as

AutophagyCells, CulturedHEK293 CellsHeLa CellsHumansImmunity, InnateModels, MolecularProtein BindingProtein Structure, Tertiaryral GTP-Binding ProteinsSignal TransductionUbiquitinationUbiquitin ThiolesteraseRalb protein, humanral GTP-Binding ProteinsUbiquitin ThiolesteraseUSP33 protein, human

Identifiers

PMID24056301
OpenAlexW2094933851

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.