Evidence map›Paper›PMID 24055869›Full record

ArticleRNA biology2013

Emerging roles of PPR proteins in trypanosomes: switches, blocks, and triggers.

Ruslan Aphasizhev, Inna Aphasizheva

Abstract read
In one paragraph

Article in RNA biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Mitochondrial RNA quality control in trypanosomes.Wiley interdisciplinary reviews. RNA · 2021
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Transcription initiation defines kinetoplast RNA boundaries.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Ruslan AphasizhevDepartment of Molecular and Cell Biology; Boston University Goldman School of Dental Medicine; Boston, MA USA.
Inna AphasizhevaDepartment of Molecular and Cell Biology; Boston University Goldman School of Dental Medicine; Boston, MA USA.

Funding

Guide RNA Binding ComplexR01AI101057 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI Ruslan Afasizhev · 2012 to 2026
$6.0M
Structures and Functions of RNA Editing TUTasesR01AI091914 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI AFASIZHEV, RUSLAN · 2011 to 2020
$4.4M
NIAID NIH HHS R01 AI091914NIAID NIH HHS R01AI091914NIAID NIH HHS R01 AI101057NIAID NIH HHS R01AI101057
6 · The paper itself

Abstract

Mitochondrial genomes of trypanosomes are composed of catenated maxicircles and mini-circles that are densely packed into a nucleoprotein structure called the kinetoplast. Maxicircle DNA (~25 kb long, 20-50 copies) resembles a typical mitochondrial genome bearing rRNA and respiratory complex subunits genes, and also contains 12 cryptogenes whose transcripts require U-insertion/deletion editing to assemble protein-coding sequences. Production of guide RNAs for the editing process remains the only established function of mini-circle DNA (~1 kb, ~10000 copies). Although editing remains the most studied step in mRNA biogenesis, recent investigations illuminated complex nucleolytic processing and pre- and post-editing 3' modification events that ultimately create translation-competent mRNAs. Key mRNA 3' processing enzymes, such as KPAP1 poly(A) polymerase and RET1 TUTase, have been identified but the mechanisms regulating their activities remain poorly understood. Discoveries of multiple pentatricopeptide repeat-containing (PPR) proteins populating polyadenylation complex and ribosomal subunits opened exciting experimental prospects that may ultimately lead to an integrated picture of mitochondrial gene expression.

Indexed as

MitochondriaPolyadenylationProtozoan ProteinsRNARNA EditingRNA, Guide, KinetoplastidaRNA, MitochondrialRNA, ProtozoanTrypanosomaProtozoan ProteinsRNARNA, Guide, KinetoplastidaRNA, MitochondrialRNA, ProtozoanpolyadenylationPPR proteinsRNA editingtrypanosomaTUTase

Identifiers

PMID24055869
PMCPMC3858432

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.