Evidence map›Paper›PMID 24055536›Full record

ArticleArchives of biochemistry and biophysics2013

Redesign of MST enzymes to target lyase activity instead promotes mutase and dehydratase activities.

Kathleen M Meneely, Qianyi Luo, Audrey L Lamb

Open access · bronzeAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Review
  3. An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.Journal of the American Chemical Society · 2016
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kathleen M MeneelyDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045, United States.
Qianyi Luo
Audrey L Lamb
University of Kansas · US

Funding

UNDERSTANDING THE ROLE OF SMALL RNAS IN ARABIDOPSIS POLLEN DEVELOPMENTP20RR016475 · NCRR · UNIVERSITY OF KANSAS MEDICAL CENTER · PI DURHAM, DIANNE NONE · 2001 to 2011
$38.1M
Salicylate production in siderophore biosynthesisR01AI077725 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI LAMB, AUDREY L · 2009 to 2012
$1.2M
Structure-function analyses of siderophore biosynthetic enzymesK02AI093675 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI LAMB, AUDREY L · 2011 to 2014
$428k
NCRR NIH HHS P20 RR016475NIAID NIH HHS K02 AI093675NIAID NIH HHS R01 AI077725NIAID NIH HHS R01 AI77725
6 · The paper itself

Abstract

The isochorismate and salicylate synthases are members of the MST family of enzymes. The isochorismate synthases establish an equilibrium for the conversion chorismate to isochorismate and the reverse reaction. The salicylate synthases convert chorismate to salicylate with an isochorismate intermediate; therefore, the salicylate synthases perform isochorismate synthase and isochorismate-pyruvate lyase activities sequentially. While the active site residues are highly conserved, there are two sites that show trends for lyase-activity and lyase-deficiency. Using steady state kinetics and HPLC progress curves, we tested the "interchange" hypothesis that interconversion of the amino acids at these sites would promote lyase activity in the isochorismate synthases and remove lyase activity from the salicylate synthases. An alternative, "permute" hypothesis, that chorismate-utilizing enzymes are designed to permute the substrate into a variety of products and tampering with the active site may lead to identification of adventitious activities, is tested by more sensitive NMR time course experiments. The latter hypothesis held true. The variant enzymes predominantly catalyzed chorismate mutase-prephenate dehydratase activities, sequentially generating prephenate and phenylpyruvate, augmenting previously debated (mutase) or undocumented (dehydratase) adventitious activities.

Indexed as

Bacterial ProteinsCatalytic DomainHydrogen BondingIntramolecular TransferasesKineticsLyasesMutationProtein EngineeringSalicylatesSiderophoresTryptophanVitamin K 2Bacterial ProteinsIntramolecular TransferasesLyasesPchA protein, Pseudomonas aeruginosaSalicylatessalicylate synthetaseSiderophoresTryptophanVitamin K 2Enzyme engineeringIsochorismate synthaseSalicylate synthaseSiderophore biosynthesis

Identifiers

PMID24055536
PMCPMC3836504
OpenAlexW2005231748

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.