Evidence map›Paper›PMID 24055112›Full record

ArticleAmerican journal of human genetics2013

Mutations in SPAG1 cause primary ciliary dyskinesia associated with defective outer and inner dynein arms.

Michael R Knowles, Lawrence E Ostrowski, Niki T Loges, Toby Hurd, Margaret W Leigh, Lu Huang, Whitney E Wolf, Johnny L Carson, Milan J Hazucha, Weining Yin and 31 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00807482 (Diagnostic and Clinical Characterization of Patients With Unusual Genetic Disorders of the Airways), which is not on this map. Cited by 86 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed, 2 pooled it
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00807482 recruitingnot on this map

Diagnostic and Clinical Characterization of Patients With Unusual Genetic Disorders of the Airways

TypeobservationalSponsorUniversity of North Carolina, Chapel HillRan2004 to 2027Enrolled1,800ConditionsKartagener Syndrome
3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 2 syntheses or guidelines pooled it, 145 citations in OpenAlex.

  1. Guideline
  2. Guideline
  3. DNAAF19-RUVBL1/2 complex recruits multiple adaptors to promote dynein arm assembly.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Proteomic Exploration of L1CAMInternational journal of molecular sciences · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. International journal of molecular sciences · 2023
    Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 9 institutions in 3 countries.

Michael R KnowlesDepartment of Medicine, UNC School of Medicine, Chapel Hill, NC 27599, USA. Electronic address: knowles@med.unc.edu.
Lawrence E Ostrowski
Niki T Loges
Toby Hurd
Margaret W Leigh
Lu Huang
Whitney E Wolf
Johnny L Carson
Milan J Hazucha
Weining Yin
Stephanie D Davis
Sharon D Dell
Thomas W Ferkol
Scott D Sagel
Kenneth N Olivier
Charlotte Jahnke
Heike Olbrich
Claudius Werner
Johanna Raidt
Julia Wallmeier
Petra Pennekamp
Gerard W Dougherty
Rim Hjeij
Heon Yung Gee
Edgar A Otto
Jan Halbritter
Moumita Chaki
Katrina A Diaz
Daniela A Braun
Jonathan D Porath
Markus Schueler
György Baktai
Matthias Griese
Emily H Turner
Alexandra P Lewis
Michael J Bamshad
Deborah A Nickerson
Friedhelm Hildebrandt
Jay Shendure
Heymut Omran
Maimoona A Zariwala
University Hospital Münster · DEUniversity of Michigan · USUniversity of North Carolina Health Care · USUniversity of Washington · USGerman Center for Lung Research · DENational Institutes of Health · USSickKids Foundation · CAUniversity of Colorado Denver · USWashington University in St. Louis · US

Funding

Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
Colorado Clinical and Translational Science Institute (UL1)UL1TR000154 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2012 to 2013
$20.4M
Longitudinal Characterization of Respiratory Tract Exacerbations and Treatment Responses in Primary Ciliary DyskinesiaU54HL096458 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVIS, STEPHANIE DUGGINS · 2009 to 2023
$20.0M
UNC Clinical and Translational Science AwardUL1TR000083 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUNGE, MARSCHALL S. · 2012 to 2013
$11.6M
Pathogenesis of PCD Lung DiseaseR01HL071798 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KNOWLES, MICHAEL R · 2004 to 2021
$7.2M
Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
Functional Studies of Novel Genes Mutated in Primary Ciliary Dyskinesia II: Genotype to PhenotypeR01HL117836 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI OSTROWSKI, LAWRENCE E · 2013 to 2023
$4.4M
SeattleSeqR01HL094976 · NHLBI · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN, GREEN, PHILIP P · 2008 to 2009
$4.0M
ARRA - NHLBI Lung Cohorts Sequencing ProjectRC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2009 to 2009
$2.6M
Molecular Tools for Genome PartitioningR21HG004749 · NHGRI · UNIVERSITY OF WASHINGTON · PI SHENDURE, JAY ASHOK · 2008 to 2009
$405k
Howard Hughes Medical InstituteIntramural NIH HHSNCATS NIH HHS UL1 TR000083NCATS NIH HHS UL1 TR000154NCATS NIH HHS UL1 TR001082NHGRI NIH HHS 5R21HG004749NHGRI NIH HHS R21 HG004749NHLBI NIH HHS 5R01HL071798NHLBI NIH HHS 5R01HL094976NHLBI NIH HHS 5U54HL096458-06NHLBI NIH HHS HHSN268201100037CNHLBI NIH HHS R01 HL071798NHLBI NIH HHS R01 HL094976NHLBI NIH HHS R01 HL117836NHLBI NIH HHS RC2 HL-102923NHLBI NIH HHS RC2 HL102923NHLBI NIH HHS U54 HL096458NIDDK NIH HHS R01 DK068306
6 · The paper itself

Abstract

Primary ciliary dyskinesia (PCD) is a genetically heterogeneous, autosomal-recessive disorder, characterized by oto-sino-pulmonary disease and situs abnormalities. PCD-causing mutations have been identified in 20 genes, but collectively they account for only ∼65% of all PCDs. To identify mutations in additional genes that cause PCD, we performed exome sequencing on three unrelated probands with ciliary outer and inner dynein arm (ODA+IDA) defects. Mutations in SPAG1 were identified in one family with three affected siblings. Further screening of SPAG1 in 98 unrelated affected individuals (62 with ODA+IDA defects, 35 with ODA defects, 1 without available ciliary ultrastructure) revealed biallelic loss-of-function mutations in 11 additional individuals (including one sib-pair). All 14 affected individuals with SPAG1 mutations had a characteristic PCD phenotype, including 8 with situs abnormalities. Additionally, all individuals with mutations who had defined ciliary ultrastructure had ODA+IDA defects. SPAG1 was present in human airway epithelial cell lysates but was not present in isolated axonemes, and immunofluorescence staining showed an absence of ODA and IDA proteins in cilia from an affected individual, thus indicating that SPAG1 probably plays a role in the cytoplasmic assembly and/or trafficking of the axonemal dynein arms. Zebrafish morpholino studies of spag1 produced cilia-related phenotypes previously reported for PCD-causing mutations in genes encoding cytoplasmic proteins. Together, these results demonstrate that mutations in SPAG1 cause PCD with ciliary ODA+IDA defects and that exome sequencing is useful to identify genetic causes of heterogeneous recessive disorders.

Indexed as

AdolescentAdultAnimalsAntigens, SurfaceAxonemeChildChild, PreschoolCiliaCiliary Motility DisordersCytoplasmDyneinsEpithelial CellsExomeFemaleGTP-Binding ProteinsHumansAntigens, SurfaceDyneinsGTP-Binding ProteinsSPAG1 protein, human

Identifiers

PMID24055112
PMCPMC3791252
OpenAlexW1968680613

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.