Evidence map›Paper›PMID 24055055›Full record

ArticleCell reports2013

Endocrine-therapy-resistant ESR1 variants revealed by genomic characterization of breast-cancer-derived xenografts.

Shunqiang Li, Dong Shen, Jieya Shao, Robert Crowder, Wenbin Liu, Aleix Prat, Xiaping He, Shuying Liu, Jeremy Hoog, Charles Lu and 45 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03582865 (Genetic Study of CYP2D6 Enzyme and Therapeutic Drug Monitoring of Tamoxifen in Premenopausal Women With Breast Cancer), which is not on this map. Cited by 404 papers.

0numbers the graph read from it
0cells of the map it votes in
404citing papers in PubMed
27.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03582865 unknown statusnot on this mapstarted 2019, after this paper: background citation

Genetic Study of CYP2D6 Enzyme and Therapeutic Drug Monitoring of Tamoxifen in Premenopausal Women With Breast Cancer

TypeobservationalSponsorAssiut UniversityRan2019 to 2020Enrolled100ConditionsBreast CancerArmsTamoxifen 20 mg
3 · Its place in the literature

Who cites it

404 citing papers in PubMed, 618 citations in OpenAlex.

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  7. ExtremeResearch square · 2026
    Article
  8. Characteristics of fusion genes in breast cancer.Cancer cell international · 2026
    Review
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344 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

55 authors at 5 institutions in 2 countries.

Shunqiang LiSection of Breast Oncology, Division of Oncology, Department of Internal Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; Siteman Cancer Center Breast Cancer Program, Washington University in St. Louis, St. Louis, MO 63110, USA.
Dong Shen
Jieya Shao
Robert Crowder
Wenbin Liu
Aleix Prat
Xiaping He
Shuying Liu
Jeremy Hoog
Charles Lu
Li Ding
Obi L Griffith
Christopher Miller
Dave Larson
Robert S Fulton
Michelle Harrison
Tom Mooney
Joshua F McMichael
Jingqin Luo
Yu Tao
Rodrigo Goncalves
Christopher Schlosberg
Jeffrey F Hiken
Laila Saied
Cesar Sanchez
Therese Giuntoli
Caroline Bumb
Crystal Cooper
Robert T Kitchens
Austin Lin
Chanpheng Phommaly
Sherri R Davies
Jin Zhang
Megha Shyam Kavuri
Donna McEachern
Yi Yu Dong
Cynthia Ma
Timothy Pluard
Michael Naughton
Ron Bose
Rama Suresh
Reida McDowell
Loren Michel
Rebecca Aft
William Gillanders
Katherine DeSchryver
Richard K Wilson
Shaomeng Wang
Gordon B Mills
Ana Gonzalez-Angulo
John R Edwards
Christopher Maher
Charles M Perou
Elaine R Mardis
Matthew J Ellis
Washington University in St. Louis · USThe University of Texas MD Anderson Cancer Center · USUniversity of North Carolina at Chapel Hill · USUniversity of Michigan–Ann Arbor · USPontificia Universidad Católica de Chile · CL

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KATHERINE A. HOADLEY · 1992 to 2026
$59.3M
Washington University Institute of Clinical and Translational Sciences (UL1)UL1RR024992 · NCRR · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2007 to 2011
$45.4M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
Targeting the PI3K Signaling Pathway in Endometrial CarcinomaP50CA098258 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BODURKA, DIANE · 2003 to 2020
$32.0M
Systems-Based Predictions of Responses to Cancer TherapyU54CA112970 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI GRAY, JOE W. · 2004 to 2014
$27.1M
Gene Expression Patterns in Human Tumors Identified Using Transcript SequencingU24CA143848 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAYES, DAVID N, PEROU, CHARLES M · 2009 to 2016
$20.8M
SPORE IN BREAST CANCERP50CA068438 · NCI · DUKE UNIVERSITY · PI LYERLY, HERBERT KIM · 1995 to 2007
$14.3M
Tyrosine Kinase-Dependant and - Independent Pathways of EGFR in Breast Cancer ProP01CA099031 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HUNG, MIEN-CHIE · 2003 to 2014
$11.6M
Novel approach to whole genome methylation profiling of breast cancerR00CA127360 · NCI · WASHINGTON UNIVERSITY · PI EDWARDS, JOHN R. · 2010 to 2012
$732k
NCATS NIH HHS UL1 TR000448NCI NIH HHS 3P50 CA68438NCI NIH HHS P01 CA099031NCI NIH HHS P01CA099031NCI NIH HHS P30 CA016672NCI NIH HHS P30 CA16672NCI NIH HHS P50 CA058223NCI NIH HHS P50 CA068438NCI NIH HHS P50 CA098258NCI NIH HHS P50-CA58223-09A1NCI NIH HHS R00 CA127360NCI NIH HHS U24 CA143848NCI NIH HHS U24-CA143848NCI NIH HHS U54 CA112970NCI NIH HHS U54CA112970NCRR NIH HHS UL1 RR024992NHGRI NIH HHS U54 HG003079PHS HHS KG081694
6 · The paper itself

Abstract

To characterize patient-derived xenografts (PDXs) for functional studies, we made whole-genome comparisons with originating breast cancers representative of the major intrinsic subtypes. Structural and copy number aberrations were found to be retained with high fidelity. However, at the single-nucleotide level, variable numbers of PDX-specific somatic events were documented, although they were only rarely functionally significant. Variant allele frequencies were often preserved in the PDXs, demonstrating that clonal representation can be transplantable. Estrogen-receptor-positive PDXs were associated with ESR1 ligand-binding-domain mutations, gene amplification, or an ESR1/YAP1 translocation. These events produced different endocrine-therapy-response phenotypes in human, cell line, and PDX endocrine-response studies. Hence, deeply sequenced PDX models are an important resource for the search for genome-forward treatment options and capture endocrine-drug-resistance etiologies that are not observed in standard cell lines. The originating tumor genome provides a benchmark for assessing genetic drift and clonal representation after transplantation.

Indexed as

Adaptor Proteins, Signal TransducingAllelesAnimalsBreast NeoplasmsDrug Resistance, NeoplasmEstradiolEstrogen Receptor alphaFemaleGene AmplificationGenomic InstabilityHeterograftsHumansMiceNeoplasm ProteinsNeoplasm StagingPhosphoproteinsAdaptor Proteins, Signal TransducingESR1 protein, humanEstradiolEstrogen Receptor alphaNeoplasm ProteinsPhosphoproteinsRNA, NeoplasmTranscription FactorsYAP1 protein, humanYAP-Signaling Proteins

Identifiers

PMID24055055
PMCPMC3881975
OpenAlexW2124358769

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.