Evidence map›Paper›PMID 24054029›Full record

ArticleForensic science international. Genetics2013

Mass spectrometric base composition profiling: Implications for forensic mtDNA databasing.

Mayra Eduardoff, Gabriela Huber, Birgit Bayer, Dagmar Schmid, Katja Anslinger, Tanja Göbel, Bettina Zimmermann, Peter M Schneider, Alexander W Röck, Walther Parson

Abstract read
In one paragraph

Article in Forensic science international. Genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Mayra EduardoffInstitute of Legal Medicine, Innsbruck Medical University, Innsbruck, Austria.
Gabriela HuberInstitute of Legal Medicine, Innsbruck Medical University, Innsbruck, Austria.
Birgit BayerInstitute of Legal Medicine, University of Munich, Munich, Germany.
Dagmar SchmidInstitute of Legal Medicine, University of Munich, Munich, Germany.
Katja AnslingerInstitute of Legal Medicine, University of Munich, Munich, Germany.
Tanja GöbelInstitute of Legal Medicine, Faculty of Medicine, University of Cologne, Cologne, Germany.
Bettina ZimmermannInstitute of Legal Medicine, Innsbruck Medical University, Innsbruck, Austria.
Peter M SchneiderInstitute of Legal Medicine, Faculty of Medicine, University of Cologne, Cologne, Germany.
Alexander W RöckInstitute of Legal Medicine, Innsbruck Medical University, Innsbruck, Austria.
Walther ParsonInstitute of Legal Medicine, Innsbruck Medical University, Innsbruck, Austria; Eberly College of Science, Penn State University, University Park, PA, USA. Electronic address: walther.parson@i-med.ac.at.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In forensic genetics mitochondrial DNA (mtDNA) is usually analyzed by direct Sanger-type sequencing (STS). This method is known to be laborious and sometimes prone to human error. Alternative methods have been proposed that lead to faster results. Among these are methods that involve mass-spectrometry resulting in base composition profiles that are, by definition, less informative than the full nucleotide sequence. Here, we applied a highly automated electrospray ionization mass spectrometry (ESI-MS) system (PLEX-ID) to an mtDNA population study to compare its performance with respect to throughput and concordance to STS. We found that the loss of information power was relatively low compared to the gain in speed and analytical standardization. The detection of point and length heteroplasmy turned out to be roughly comparable between the technologies with some individual differences related to the processes. We confirm that ESI-MS provides a valuable platform for analyzing mtDNA variation that can also be applied in the forensic context.

Indexed as

Databases, GeneticForensic GeneticsBase CompositionDNA, MitochondrialHumansSpectrometry, Mass, Electrospray IonizationDNA, MitochondrialLength heteroplasmyMass spectrometryMitochondrial DNAPoint heteroplasmySanger-type sequencing

Identifiers

PMID24054029
PMCPMC3820008

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.