Evidence map›Paper›PMID 24053607›Full record

ArticleBMC genomics2013

Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi.

Panagiotis Ioannidis, Kelly L Johnston, David R Riley, Nikhil Kumar, James R White, Karen T Olarte, Sandra Ott, Luke J Tallon, Jeremy M Foster, Mark J Taylor and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Royal Society open science · 2023
    Article
  5. Article
  6. Article
  7. Nearly Complete Genome Sequence of Brugia malayi Strain FR3.Microbiology resource announcements · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Lessons from the genomes and transcriptomes of filarial nematodes.Molecular and biochemical parasitology · 2017
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Panagiotis IoannidisInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA. jdhotopp@som.umaryland.edu.
Kelly L Johnston
David R Riley
Nikhil Kumar
James R White
Karen T Olarte
Sandra Ott
Luke J Tallon
Jeremy M Foster
Mark J Taylor
Julie C Dunning Hotopp
University of Maryland, Baltimore · USLiverpool School of Tropical Medicine · GBNew England Biolabs (United States) · US

Funding

Impact of Bacterial-Animal Lateral Gene Transfer on Human HealthDP2OD007372 · OD · UNIVERSITY OF MARYLAND BALTIMORE · PI DUNNING HOTOPP, JULIE · 2010 to 2010
$2.3M
NIH HHS 1-DP2-OD007372NIH HHS DP2 OD007372
6 · The paper itself

Abstract

backgroundLymphatic filariasis is a neglected tropical disease afflicting more than 120 million people, while another 1.3 billion people are at risk of infection. The nematode worm Brugia malayi is one of the causative agents of the disease and exists in a mutualistic symbiosis with Wolbachia bacteria. Since extensive lateral gene transfer occurs frequently between Wolbachia and its hosts, we sought to measure the extent of such LGT in B. malayi by whole genome sequencing of Wolbachia-depleted worms.

resultsA considerable fraction (at least 115.4-kbp, or 10.6%) of the 1.08-Mbp Wolbachia wBm genome has been transferred to its nematode host and retains high levels of similarity, including 227 wBm genes and gene fragments. Complete open reading frames were transferred for 32 of these genes, meaning they have the potential to produce functional proteins. Moreover, four transfers have evidence of life stage-specific regulation of transcription at levels similar to other nematode transcripts, strengthening the possibility that they are functional.

conclusionsThere is extensive and ongoing transfer of Wolbachia DNA to the worm genome and some transfers are transcribed in a stage-specific manner at biologically relevant levels.

Indexed as

Gene Transfer, HorizontalAnimalsBrugia malayiDNA, BacterialGenome, BacterialGenome, HelminthOpen Reading FramesSequence Analysis, DNAWolbachiaDNA, Bacterial

Identifiers

PMID24053607
PMCPMC3849323
OpenAlexW2097676613

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.