Evidence map›Paper›PMID 24052952›Full record

ArticleStem cell reports2013

Reprogramming to pluripotency using designer TALE transcription factors targeting enhancers.

Xuefei Gao, Jian Yang, Jason C H Tsang, Jolene Ooi, Donghai Wu, Pentao Liu

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Genome Editing and Cardiac Regeneration.Advances in experimental medicine and biology · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Rejuvenation of β cells by epigenetic editing.The Journal of clinical investigation · 2019
    Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Reprogramming cell fate with a genome-scale library of artificial transcription factors.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  19. Review
  20. CRISPR-Mediated Epigenome Editing.The Yale journal of biology and medicine · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Xuefei GaoWellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1HH, UK.
Jian Yang
Jason C H Tsang
Jolene Ooi
Donghai Wu
Pentao Liu
Wellcome Sanger Institute · GBChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The modular DNA recognition code of the transcription-activator-like effectors (TALEs) from plant pathogenic bacterial genus Xanthomonas provides a powerful genetic tool to create designer transcription factors (dTFs) targeting specific DNA sequences for manipulating gene expression. Previous studies have suggested critical roles of enhancers in gene regulation and reprogramming. Here, we report dTF activator targeting the distal enhancer of the Pou5f1 (Oct4) locus induces epigenetic changes, reactivates its expression, and substitutes exogenous OCT4 in reprogramming mouse embryonic fibroblast cells (MEFs) to induced pluripotent stem cells (iPSCs). Similarly, dTF activator targeting a Nanog enhancer activates Nanog expression and reprograms epiblast stem cells (EpiSCs) to iPSCs. Conversely, dTF repressors targeting the same genetic elements inhibit expression of these loci, and effectively block reprogramming. This study indicates that dTFs targeting specific enhancers can be used to study other biological processes such as transdifferentiation or directed differentiation of stem cells.

Indexed as

Cellular ReprogrammingAnimalsCells, CulturedEmbryonic Stem CellsEpigenesis, GeneticGene Expression RegulationHomeodomain ProteinsInduced Pluripotent Stem CellsMiceNanog Homeobox ProteinOctamer Transcription Factor-3Regulatory Sequences, Nucleic AcidTranscription FactorsHomeodomain ProteinsNanog Homeobox ProteinNanog protein, mouseOctamer Transcription Factor-3Pou5f1 protein, mouseTranscription Factors

Identifiers

PMID24052952
PMCPMC3757749
OpenAlexW2055916860

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.