Evidence map›Paper›PMID 24051049›Full record

ArticleDNA repair2013

Xeroderma pigmentosum complementation group C protein (XPC) serves as a general sensor of damaged DNA.

Steven M Shell, Edward K Hawkins, Miaw-Sheue Tsai, Aye Su Hlaing, Carmelo J Rizzo, Walter J Chazin

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Mechanism of action of nucleotide excision repair machinery.Biochemical Society transactions · 2022
    Review
  9. Review
  10. Pharmaceutics · 2021
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Repair-Resistant DNA Lesions.Chemical research in toxicology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Steven M ShellDepartment of Biochemistry, Center for Structural Biology, Center in Molecular Toxicology, and Vanderbilt-Ingram Cancer Center, Vanderbilt University, Nashville, TN 37232, USA.
Edward K Hawkins
Miaw-Sheue Tsai
Aye Su Hlaing
Carmelo J Rizzo
Walter J Chazin
Vanderbilt University · USLawrence Berkeley National Laboratory · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
TRAINING PROGRAM IN ENVIRONMENTAL TOXICOLOGYT32ES007028 · NIEHS · VANDERBILT UNIVERSITY · PI F PETER Guengerich, Fiona Edith Harrison · 1985 to 2026
$15.7M
Synthesis, StructUre and Replication of Carcirogen-Modified OligonucleotidesR01ES016561 · NIEHS · VANDERBILT UNIVERSITY · PI RIZZO, CARMELO J · 2010 to 2014
$1.7M
NCI NIH HHS P01 CA092584NCI NIH HHS P30 CA068485NIEHS NIH HHS P30 ES000267NIEHS NIH HHS P30 ES00267NIEHS NIH HHS R01 ES016561NIEHS NIH HHS T32 ES007028NIEHS NIH HHS T32 ES07028
6 · The paper itself

Abstract

The Xeroderma pigmentosum complementation group C protein (XPC) serves as the primary initiating factor in the global genome nucleotide excision repair pathway (GG-NER). Recent reports suggest XPC also stimulates repair of oxidative lesions by base excision repair. However, whether XPC distinguishes among various types of DNA lesions remains unclear. Although the DNA binding properties of XPC have been studied by several groups, there is a lack of consensus over whether XPC discriminates between DNA damaged by lesions associated with NER activity versus those that are not. In this study we report a high-throughput fluorescence anisotropy assay used to measure the DNA binding affinity of XPC for a panel of DNA substrates containing a range of chemical lesions in a common sequence. Our results demonstrate that while XPC displays a preference for binding damaged DNA, the identity of the lesion has little effect on the binding affinity of XPC. Moreover, XPC was equally capable of binding to DNA substrates containing lesions not repaired by GG-NER. Our results suggest XPC may act as a general sensor of damaged DNA that is capable of recognizing DNA containing lesions not repaired by NER.

Indexed as

DNA DamageAnimalsBase SequenceBinding SitesDNADNA-Binding ProteinsDNA RepairDNA Repair EnzymesFluorescence PolarizationHigh-Throughput Screening AssaysHumansSf9 CellsSpodopteraDNADNA-Binding ProteinsDNA Repair EnzymesRAD23B protein, humanXPC protein, humanBase excision repairDNA bindingHigh-throughput assayLesion recognitionNucleotide excision repairXPC

Identifiers

PMID24051049
PMCPMC3825762
OpenAlexW1975123165

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.