Evidence map›Paper›PMID 24050758›Full record

ArticleAnalytical chemistry2013

Matrix assisted laser desorption ionization imaging mass spectrometry workflow for spatial profiling analysis of N-linked glycan expression in tissues.

Thomas W Powers, E Ellen Jones, Lucy R Betesh, Patrick R Romano, Peng Gao, John A Copland, Anand S Mehta, Richard R Drake

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 167 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Spatial Molecular Imaging of the Glycome Using Mass Spectrometry.Journal of visualized experiments : JoVE · 2025
    Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. The multifaceted roles of the brain glycogen.Journal of neurochemistry · 2024
    Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Enhanced Detection of ChargedAnalytical chemistry · 2023
    Article
  20. Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Thomas W PowersDepartment of Cell and Molecular Pharmacology and Experimental Therapeutics and MUSC Proteomics Center, Medical University of South Carolina , 173 Ashley Avenue, Charleston, South Carolina, 29425 United States.
E Ellen Jones
Lucy R Betesh
Patrick R Romano
Peng Gao
John A Copland
Anand S Mehta
Richard R Drake
Medical University of South Carolina · USDrexel University · USMayo Clinic in Florida · US

Funding

Predicting HCC through GlycomicsR01CA120206 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI MEHTA, ANAND S. · 2006 to 2016
$4.3M
Aberrantly secreted glycoproteins as markers of liver cancerU01CA168856 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI MEHTA, ANAND S. · 2012 to 2016
$1.5M
TGF Beta receptor biology in human renal cell carcinomaR01CA104505 · NCI · MAYO CLINIC JACKSONVILLE · PI COPLAND, JOHN A. · 2004 to 2009
$1.4M
Glycan Biomarkers of Prostate Cancer in Prostatic FluidsR01CA135087 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DRAKE, RICHARD R. · 2009 to 2012
$989k
Proximal Prostate Fluids for Protein and miRNA BiomarkersR21CA137704 · NCI · EASTERN VIRGINIA MEDICAL SCHOOL · PI DRAKE, RICHARD R. · 2009 to 2010
$347k
NCI NIH HHS R01 CA104505NCI NIH HHS R01CA104505NCI NIH HHS R01CA104505-05S1NCI NIH HHS R01 CA120206NCI NIH HHS R01 CA135087NCI NIH HHS R01CA135087NCI NIH HHS R21 CA137704NCI NIH HHS R21CA137704NCI NIH HHS U01 CA168856
6 · The paper itself

Abstract

A new matrix assisted laser desorption ionization imaging mass spectrometry (MALDI-IMS) method to spatially profile the location and distribution of multiple N-linked glycan species in tissues is described. Application of an endoglycosidase, peptide N-glycosidase F (PNGaseF), directly on tissues followed by incubation releases N-linked glycan species amenable to detection by MALDI-IMS. The method has been designed to simultaneously profile the multiple glycan species released from intracellular organelle and cell surface glycoproteins, while maintaining histopathology compatible preparation workflows. A recombinant PNGaseF enzyme was sprayed uniformly across mouse brain tissue slides, incubated for 2 h, then sprayed with 2,5-dihydroxybenzoic acid matrix for MALDI-IMS analysis. Using this basic approach, global snapshots of major cellular N-linked glycoforms were detected, including their tissue localization and distribution, structure, and relative abundance. Off-tissue extraction and modification of glycans from similarly processed tissues and further mass spectrometry or HPLC analysis was done to assign structural designations. MALDI-IMS has primarily been utilized to spatially profile proteins, lipids, drug, and small molecule metabolites in tissues, but it has not been previously applied to N-linked glycan analysis. The translatable MALDI-IMS glycan profiling workflow described herein can readily be applied to any tissue type of interest. From a clinical diagnostics perspective, the ability to differentially profile N-glycans and correlate their molecular expression to histopathological changes can offer new approaches to identifying novel disease related targets for biomarker and therapeutic applications.

Indexed as

Gene Expression RegulationAnimalsBrainGlycoside HydrolasesHumansKidneyMicePolysaccharidesSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationGlycoside HydrolasesPolysaccharides

Identifiers

PMID24050758
PMCPMC3969840
OpenAlexW2109944965

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.