Evidence map›Paper›PMID 24049175›Full record

ArticleJournal of virology2013

The protein interaction network of bacteriophage lambda with its host, Escherichia coli.

Sonja Blasche, Stefan Wuchty, Seesandra V Rajagopala, Peter Uetz

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  5. Article
  6. Article
  7. Molecular Modeling the Proteins from theAntibiotics (Basel, Switzerland) · 2021
    Review
  8. Unraveling Protein Interactions between the Temperate Virus Bam35 and ItsInternational journal of molecular sciences · 2021
    Article
  9. Article
  10. Article
  11. Protein-protein interactions of human viruses.Seminars in cell & developmental biology · 2020
    Review
  12. Article
  13. The Protein-Protein Interaction Network ofFrontiers in physiology · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Reconstruction and Application of Protein-Protein Interaction Network.International journal of molecular sciences · 2016
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 2 countries.

Sonja BlascheGenomics and Proteomics Core Facilities, German Cancer Research Center, Heidelberg, Germany.
Stefan Wuchty
Seesandra V Rajagopala
Peter Uetz
German Cancer Research Center · DEJ. Craig Venter Institute · USNational Center for Biotechnology Information · USVirginia Commonwealth University · US

Funding

A Protein-Protein Interaction Map of Escherichia coliR01GM079710 · NIGMS · J. CRAIG VENTER INSTITUTE, INC. · PI RAJAGOPALA, SEESANDRA VENKATAPPA · 2008 to 2011
$2.5M
NIGMS NIH HHS R01 GM079710NIGMS NIH HHS R01GM79710
6 · The paper itself

Abstract

Although most of the 73 open reading frames (ORFs) in bacteriophage λ have been investigated intensively, the function of many genes in host-phage interactions remains poorly understood. Using yeast two-hybrid screens of all lambda ORFs for interactions with its host Escherichia coli, we determined a raw data set of 631 host-phage interactions resulting in a set of 62 high-confidence interactions after multiple rounds of retesting. These links suggest novel regulatory interactions between the E. coli transcriptional network and lambda proteins. Targeted host proteins and genes required for lambda infection are enriched among highly connected proteins, suggesting that bacteriophages resemble interaction patterns of human viruses. Lambda tail proteins interact with both bacterial fimbrial proteins and E. coli proteins homologous to other phage proteins. Lambda appears to dramatically differ from other phages, such as T7, because of its unusually large number of modified and processed proteins, which reduces the number of host-virus interactions detectable by yeast two-hybrid screens.

Indexed as

Protein Interaction MapsBacterial ProteinsBacteriophage lambdaEscherichia coliHost-Pathogen InteractionsProtein BindingViral ProteinsBacterial ProteinsViral Proteins

Identifiers

PMID24049175
PMCPMC3838138
OpenAlexW2163558609

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.