Evidence map›Paper›PMID 24049077›Full record

ArticleNucleic acids research2013

Robust RNAi enhancement via human Argonaute-2 overexpression from plasmids, viral vectors and cell lines.

Kathleen Börner, Dominik Niopek, Gabriella Cotugno, Michaela Kaldenbach, Teresa Pankert, Joschka Willemsen, Xian Zhang, Nina Schürmann, Stefan Mockenhaupt, Andrius Serva and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Pooled it
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  5. Optimal delivery of RNA interference by viral vectors for cancer therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Review
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  20. Loss ofAmerican journal of physiology. Renal physiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 4 countries.

Kathleen BörnerDepartment of Infectious Diseases, Virology, Heidelberg University Hospital, Im Neuenheimer Feld 324, D-69120 Heidelberg, Germany, Cluster of Excellence CellNetworks, Heidelberg University, Im Neuenheimer Feld 267, D-69120 Heidelberg, Germany, Department of Medicine III, University Hospital Aachen, Pauwelstrasse 30, D-52074 Aachen, Germany, Department of Infectious Diseases, Molecular Virology, Heidelberg University, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany, Division Signaling and Functional Genomics, German Cancer Research Center, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany, BioQuant, Heidelberg University, Im Neuenheimer Feld 267, D-69120 Heidelberg, Germany and Department of Pediatric Oncology, Hematology, Immunology and Pulmonology, Heidelberg University Hospital, Im Neuenheimer Feld 350, D-69120 Heidelberg, Germany.
Dominik Niopek
Gabriella Cotugno
Michaela Kaldenbach
Teresa Pankert
Joschka Willemsen
Xian Zhang
Nina Schürmann
Stefan Mockenhaupt
Andrius Serva
Marie-Sophie Hiet
Ellen Wiedtke
Mirco Castoldi
Vytaute Starkuviene
Holger Erfle
Daniel F Gilbert
Ralf Bartenschlager
Michael Boutros
Marco Binder
Konrad Streetz
Hans-Georg Kräusslich
Dirk Grimm
Heidelberg University · DEHeidelberg University · USGerman Cancer Research Center · DERWTH Aachen University · DEUniversitätsklinikum Aachen · DEUniversity Hospital Heidelberg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As the only mammalian Argonaute protein capable of directly cleaving mRNAs in a small RNA-guided manner, Argonaute-2 (Ago2) is a keyplayer in RNA interference (RNAi) silencing via small interfering (si) or short hairpin (sh) RNAs. It is also a rate-limiting factor whose saturation by si/shRNAs limits RNAi efficiency and causes numerous adverse side effects. Here, we report a set of versatile tools and widely applicable strategies for transient or stable Ago2 co-expression, which overcome these concerns. Specifically, we engineered plasmids and viral vectors to co-encode a codon-optimized human Ago2 cDNA along with custom shRNAs. Furthermore, we stably integrated this Ago2 cDNA into a panel of standard human cell lines via plasmid transfection or lentiviral transduction. Using various endo- or exogenous targets, we demonstrate the potential of all three strategies to boost mRNA silencing efficiencies in cell culture by up to 10-fold, and to facilitate combinatorial knockdowns. Importantly, these robust improvements were reflected by augmented RNAi phenotypes and accompanied by reduced off-targeting effects. We moreover show that Ago2/shRNA-co-encoding vectors can enhance and prolong transgene silencing in livers of adult mice, while concurrently alleviating hepatotoxicity. Our customizable reagents and avenues should broadly improve future in vitro and in vivo RNAi experiments in mammalian systems.

Indexed as

Gene Knockdown TechniquesGenetic VectorsRNA InterferenceAnimalsArgonaute ProteinsCell Line, TumorDependovirusHEK293 CellsHumansLentivirusLiverMicePhenotypePlasmidsRNA, Small InterferingTransduction, GeneticAGO2 protein, humanArgonaute ProteinsRNA, Small Interfering

Identifiers

PMID24049077
PMCPMC3834839
OpenAlexW2106414797

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.