Evidence map›Paper›PMID 24048785›Full record

ArticleCancer2011

John Cunningham virus T-antigen expression in anal carcinoma.

Sonia Ramamoorthy, Bikash Devaraj, Katsumi Miyai, Linda Luo, Yu-Tsueng Liu, C Richard Boland, Ajay Goel, John M Carethers

Open access · bronzeAbstract read
In one paragraph

Article in Cancer, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Study on JV Virus in Patients with Colon Cancer Type AdenocarcinomaAsian Pacific journal of cancer prevention : APJCP · 2019
    Article
  4. Article
  5. Review
  6. Prospective study of seroreactivity to JC virus T-antigen and risk of colorectal cancers and adenomas.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2014
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Sonia RamamoorthyDepartment of Surgery, University of California, San Diego, California; Moores Comprehensive Cancer Center, University of California, San Diego, California.
Bikash Devaraj
Katsumi Miyai
Linda Luo
Yu-Tsueng Liu
C Richard Boland
Ajay Goel
John M Carethers
University of California, San Diego · USBaylor University Medical Center · USUniversity of California System · USUniversity of Michigan–Ann Arbor · US

Funding

Research Education CoreU54CA132384 · NCI · SAN DIEGO STATE UNIVERSITY · PI CRIPPS, RICHARD MATTHEW, CROWE, SHEILA E. · 2008 to 2022
$20.7M
Research Education CoreU54CA132379 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ARREDONDO, ELVA M, CROWE, SHEILA E. · 2008 to 2021
$16.1M
MICROSATELLITE INSTABILITY &DNA MISMATCH REPAIR SYSTEMR01DK067287 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARETHERS, JOHN M · 2005 to 2015
$3.2M
The UCSD Digestive Diseases Research Development CenterR24DK080506 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ECKMANN, LARS · 2008 to 2012
$2.7M
JC Virus and Tumor Formation in the Human ColonR01CA098572 · NCI · BAYLOR RESEARCH INSTITUTE · PI BOLAND, CLEMENT RICHARD · 2004 to 2014
$2.7M
NCI NIH HHS CA132379NCI NIH HHS CA132384NCI NIH HHS CA98572NCI NIH HHS R01 CA098572NCI NIH HHS U54 CA132379NCI NIH HHS U54 CA132384NIDDK NIH HHS DK067287NIDDK NIH HHS DK080506NIDDK NIH HHS R01 DK067287NIDDK NIH HHS R24 DK080506
6 · The paper itself

Abstract

backgroundAnal carcinoma is thought to be driven by human papillomavirus (HPV) infection through interrupting function of cell regulatory proteins such as p53 and pRb. John Cunningham virus (JCV) expresses a T-antigen that causes malignant transformation through development of aneuploidy and interaction with some of the same regulatory proteins as HPV. JCV T-antigen is present in brain, gastric, and colon malignancies, but has not been evaluated in anal cancers. The authors examined a cohort of anal cancers for JCV T-antigen and correlated this with clinicopathologic data.

methodsArchived anal carcinomas were analyzed for JCV T-antigen expression. DNA from tumor and normal tissue was sequenced for JCV with viral copies determined by quantitative polymerase chain reaction and Southern blotting. HPV and microsatellite instability (MSI) status was correlated with JCV T-antigen expression.

resultsOf 21 cases of anal cancer (mean age 49 years, 38% female), 12 (57%) were in human immunodeficiency virus (HIV)-positive individuals. All 21 cancers expressed JCV T-antigen, including 9 HPV-negative specimens. More JCV copies were present in cancer versus surrounding normal tissue (mean 32.54 copies/μg DNA vs 2.98 copies/μg DNA, P = .0267). There was no correlation between disease stage and viral copies, nor between viral copies and HIV-positive or -negative status (28.7 vs 36.34 copies/μg DNA, respectively, P = .7804). In subset analysis, no association was found between JCV T-antigen expression and HPV or MSI status.

conclusionsAnal carcinomas uniformly express JCV T-antigen and contain more viral copies compared with surrounding normal tissue. JCV and its T-antigen oncogenic protein, presumably through interruption of cell regulatory proteins, may play a role in anal cancer pathogenesis.

Indexed as

Gene ExpressionAdultAgedAntigens, Viral, TumorAnus NeoplasmsCarcinomaFemaleHumansMaleMicrosatellite InstabilityMicrosatellite RepeatsMiddle AgedNeoplasm StagingPolyomaviridaePolyomavirus InfectionsTumor Virus InfectionsAntigens, Viral, Tumoranal carcinomahuman immunodeficiency virushuman papilloma virusJohn Cunningham virusT-antigen

Identifiers

PMID24048785
PMCPMC3060305
OpenAlexW2016720599

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.