Evidence map›Paper›PMID 24048647›Full record

ArticleG3 (Bethesda, Md.)2013

A genome-wide association study reveals genes associated with fusarium ear rot resistance in a maize core diversity panel.

Charles T Zila, L Fernando Samayoa, Rogelio Santiago, Ana Butrón, James B Holland

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

61 citing papers in PubMed.

  1. Article
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  9. Prediction of resistance, virulence, and host-by-pathogen interactions using dual-genome prediction models.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  10. Article
  11. Review
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  18. Associative and Physical Mapping of Markers Related toInternational journal of molecular sciences · 2022
    Article
  19. Identification ofFrontiers in plant science · 2022
    Article
  20. Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Charles T ZilaDepartment of Crop Science, North Carolina State University, Raleigh, North Carolina 27695.
L Fernando Samayoa
Rogelio Santiago
Ana Butrón
James B Holland

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fusarium ear rot is a common disease of maize that affects food and feed quality globally. Resistance to the disease is highly quantitative, and maize breeders have difficulty incorporating polygenic resistance alleles from unadapted donor sources into elite breeding populations without having a negative impact on agronomic performance. Identification of specific allele variants contributing to improved resistance may be useful to breeders by allowing selection of resistance alleles in coupling phase linkage with favorable agronomic characteristics. We report the results of a genome-wide association study to detect allele variants associated with increased resistance to Fusarium ear rot in a maize core diversity panel of 267 inbred lines evaluated in two sets of environments. We performed association tests with 47,445 single-nucleotide polymorphisms (SNPs) while controlling for background genomic relationships with a mixed model and identified three marker loci significantly associated with disease resistance in at least one subset of environments. Each associated SNP locus had relatively small additive effects on disease resistance (±1.1% on a 0-100% scale), but nevertheless were associated with 3 to 12% of the genotypic variation within or across environment subsets. Two of three identified SNPs colocalized with genes that have been implicated with programmed cell death. An analysis of associated allele frequencies within the major maize subpopulations revealed enrichment for resistance alleles in the tropical/subtropical and popcorn subpopulations compared with other temperate breeding pools.

Indexed as

Genome-Wide Association StudyAllelesDisease ResistanceFusariumGene FrequencyGenetic LociGenotypeLinkage DisequilibriumModels, GeneticPlant DiseasesPolymorphism, Single NucleotideZea maysassociation analysisdisease resistancegenotype-by-environment interactionmaizequantitative trait

Identifiers

PMID24048647
PMCPMC3815068

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.