Evidence map›Paper›PMID 24048645›Full record

ArticleG3 (Bethesda, Md.)2013

Molecular phylogeography of a human autosomal skin color locus under natural selection.

Victor A Canfield, Arthur Berg, Steven Peckins, Steven M Wentzel, Khai Chung Ang, Stephen Oppenheimer, Keith C Cheng

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Victor A CanfieldDepartment of Pharmacology, Penn State College of Medicine, Hershey, Pennsylvania 17033.
Arthur Berg
Steven Peckins
Steven M Wentzel
Khai Chung Ang
Stephen Oppenheimer
Keith C Cheng

Funding

Penn State Clinical and Translational Science InstituteUL1TR000127 · NCATS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI SINOWAY, LAWRENCE I · 2012 to 2015
$17.1M
Web-based Atlas of Zebrafish Microanatomy as a Community ResourceR24RR017441 · NCRR · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI CHENG, KEITH CHI · 2004 to 2011
$4.3M
Function of calcium exchangers in vetebrate pigmentationR01AR052535 · NIAMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI CHENG, KEITH CHI · 2006 to 2010
$1.7M
NCATS NIH HHS UL1 TR000127NCRR NIH HHS R24 RR017441NIAMS NIH HHS R01 AR052535
6 · The paper itself

Abstract

Divergent natural selection caused by differences in solar exposure has resulted in distinctive variations in skin color between human populations. The derived light skin color allele of the SLC24A5 gene, A111T, predominates in populations of Western Eurasian ancestry. To gain insight into when and where this mutation arose, we defined common haplotypes in the genomic region around SLC24A5 across diverse human populations and deduced phylogenetic relationships between them. Virtually all chromosomes carrying the A111T allele share a single 78-kb haplotype that we call C11, indicating that all instances of this mutation in human populations share a common origin. The C11 haplotype was most likely created by a crossover between two haplotypes, followed by the A111T mutation. The two parental precursor haplotypes are found from East Asia to the Americas but are nearly absent in Africa. The distributions of C11 and its parental haplotypes make it most likely that these two last steps occurred between the Middle East and the Indian subcontinent, with the A111T mutation occurring after the split between the ancestors of Europeans and East Asians.

Indexed as

PhylogenySelection, GeneticAllelesAntiportersCluster AnalysisGenetics, PopulationHaplotypesHumansPhylogeographyPolymorphism, Single NucleotideRecombination, GeneticSkin PigmentationAntiportersSLC24A5 protein, humanhaplotypenatural selectionrecombinationskin colorSLC24A5

Identifiers

PMID24048645
PMCPMC3815065

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.