Evidence map›Paper›PMID 24048575›Full record

ArticleBiology of reproduction2013

Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline.

Jianqiang Bao, Jingwen Wu, Andrew S Schuster, Grant W Hennig, Wei Yan

Open access · bronzeAbstract read
In one paragraph

Article in Biology of reproduction, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 97 citations in OpenAlex.

  1. Review
  2. Mechanism of LncRNA Gm2044 in germ cell development.Frontiers in cell and developmental biology · 2024
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Long Noncoding RNAAnimals : an open access journal from MDPI · 2021
    Article
  9. Article
  10. Article
  11. A Testis-Specific Long Noncoding RNA,Frontiers in endocrinology · 2021
    Article
  12. Transcriptomics of Meiosis in the Male Mouse.Frontiers in cell and developmental biology · 2021
    Review
  13. Long non-coding RNAs (lncRNAs) in spermatogenesis and male infertility.Reproductive biology and endocrinology : RB&E · 2020
    Review
  14. Article
  15. Long noncoding RNAs: new insights in modulating mammalian spermatogenesis.Journal of animal science and biotechnology · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Jianqiang BaoDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada.
Jingwen Wu
Andrew S Schuster
Grant W Hennig
Wei Yan
University of Nevada, Reno · US

Funding

STRETCH DEPENDENT POTASSIUM CHANNEL REGULATION IN OVERACTIVE BLADDERP20RR018751 · NCRR · UNIVERSITY OF NEVADA RENO · PI KOH, SANG DON · 2003 to 2011
$17.3M
Regulation of Spermatogenesis by X-linked miRNAsR01HD060858 · NICHD · UNIVERSITY OF NEVADA RENO · PI MCCARREY, JOHN R, YAN, WEI · 2010 to 2014
$2.0M
Are sperm-borne small RNAs important?R21HD071736 · NICHD · UNIVERSITY OF NEVADA RENO · PI YAN, WEI · 2012 to 2013
$380k
Regulation of Leydig cell function by small noncoding RNAsR03HD074573 · NICHD · UNIVERSITY OF NEVADA RENO · PI YAN, WEI · 2013 to 2014
$139k
NCRR NIH HHS P20 RR018751NCRR NIH HHS P20-RR18751NICHD NIH HHS HD060858NICHD NIH HHS HD071736NICHD NIH HHS HD074573NICHD NIH HHS R01 HD060858NICHD NIH HHS R03 HD074573NICHD NIH HHS R21 HD071736
6 · The paper itself

Abstract

In mammals, the transcriptome of large noncoding RNAs (lncRNAs) is believed to be greater than that of messenger RNAs (mRNAs). Some lncRNAs, especially large intergenic noncoding RNAs (lincRNAs), participate in epigenetic regulation by binding chromatin-modifying protein complexes and regulating protein-coding gene expression. Given that epigenetic regulation plays a critical role in male germline development, we embarked on expression profiling of both lncRNAs and mRNAs during male germline reprogramming and postnatal development using microarray analyses. We identified thousands of lncRNAs and hundreds of lincRNAs that are either up- or downregulated at six critical time points during male germ cell development. In addition, highly regulated lncRNAs were correlated with nearby (<30 kb) mRNA gene clusters, which were also significantly up- or downregulated. Large ncRNAs can be localized to both the nucleus and cytoplasm, with nuclear lncRNAs mostly associated with key components of the chromatin-remodeling protein complexes. Our data indicate that expression of lncRNAs is dynamically regulated during male germline development and that lncRNAs may function to regulate gene expression at both transcriptional and posttranscriptional levels via genetic and epigenetic mechanisms.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsEmbryo, MammalianFemaleGene Expression ProfilingGerm CellsMaleMiceMice, Inbred C57BLMicroarray AnalysisRNA, Long NoncodingSpermatogenesisSpermatozoaRNA, Long Noncodingepigeneticsfertilitygerm cellreproductionspermatogenesis

Identifiers

PMID24048575
PMCPMC4076377
OpenAlexW2021656002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.