Evidence map›Paper›PMID 24047898›Full record

ArticleThe Journal of biological chemistry2013

Immunogenicity of membrane-bound HIV-1 gp41 membrane-proximal external region (MPER) segments is dominated by residue accessibility and modulated by stereochemistry.

Mikyung Kim, Likai Song, James Moon, Zhen-Yu J Sun, Anna Bershteyn, Melissa Hanson, Derek Cain, Selasie Goka, Garnett Kelsoe, Gerhard Wagner and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

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  5. Topological analysis of the gp41 MPER on lipid bilayers relevant to the metastable HIV-1 envelope prefusion state.Proceedings of the National Academy of Sciences of the United States of America · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Mikyung KimFrom the Laboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115.
Likai Song
James Moon
Zhen-Yu J Sun
Anna Bershteyn
Melissa Hanson
Derek Cain
Selasie Goka
Garnett Kelsoe
Gerhard Wagner
Darrell Irvine
Ellis L Reinherz
Massachusetts Institute of Technology · USDana-Farber Cancer Institute · USDuke University · USHarvard University · USBrigham and Women's Hospital · USNational High Magnetic Field Laboratory · US

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MATTHEW G. VANDER HEIDEN · 1985 to 2026
$93.9M
Structural Approches to HIV-1 Immunogen Design for BNAb GenerationU19AI091693 · NIAID · DANA-FARBER CANCER INST · PI REINHERZ, ELLIS L · 2010 to 2015
$9.9M
Structural Approaches To HIV-1 Immunogen Design For BNAb GenerationR01AI084785 · NIAID · DANA-FARBER CANCER INST · PI REINHERZ, ELLIS L · 2009 to 2013
$2.9M
B-cell Tolerance and Humoral Immunity to HIV-1R01AI081579 · NIAID · DUKE UNIVERSITY · PI KELSOE, GARNETT H · 2009 to 2012
$1.6M
NCI NIH HHS P30 CA014051NIAID NIH HHS AI81579NIAID NIH HHS AI84785NIAID NIH HHS AI91693NIAID NIH HHS HHSN272201000053CNIAID NIH HHS R01 AI081579NIAID NIH HHS R01 AI084785NIAID NIH HHS U19 AI091693
6 · The paper itself

Abstract

Structural characterization of epitope-paratope pairs has contributed to the understanding of antigenicity. By contrast, few structural studies relate to immunogenicity, the process of antigen-induced immune responses in vivo. Using a lipid-arrayed membrane-proximal external region (MPER) of HIV-1 glycoprotein 41 as a model antigen, we investigated the influence of physicochemical properties on immunogenicity in relation to structural modifications of MPER/liposome vaccines. Anchoring the MPER to the membrane via an alkyl tail or transmembrane domain retained the MPER on liposomes in vivo, while preserving MPER secondary structure. However, structural modifications that affected MPER membrane orientation and antigenic residue accessibility strongly impacted induced antibody responses. The solvent-exposed MPER tryptophan residue (Trp-680) was immunodominant, focusing immune responses, despite sequence variability elsewhere. Nonetheless, immunogenicity could be readily manipulated using site-directed mutagenesis or structural constraints to modulate amino acid surface display. These studies provide fundamental insights for immunogen design aimed at targeting B cell antibody responses.

Indexed as

AIDS VaccinesAnimalsAntigens, ViralB-LymphocytesEpitopes, B-LymphocyteHIV-1HIV Envelope Protein gp41HumansMiceMice, Inbred BALB CMutagenesis, Site-DirectedPeptidesAIDS VaccinesAntigens, ViralEpitopes, B-Lymphocytegp41 protein, Human immunodeficiency virus 1HIV Envelope Protein gp41PeptidesAntibodiesHIV-1ImmunodominanceImmunogenicityInfectious DiseasesProtein StructureVaccine Development

Identifiers

PMID24047898
PMCPMC3814781
OpenAlexW2061149467

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.