Evidence map›Paper›PMID 24047479›Full record

ArticleLeukemia & lymphoma2014

Genomic imbalance defines three prognostic groups for risk stratification of patients with chronic lymphocytic leukemia.

Jane Houldsworth, Asha Guttapalli, Venkata Thodima, Xiao Jie Yan, Geetu Mendiratta, Tania Zielonka, Gouri Nanjangud, Weiyi Chen, Sujata Patil, Anthony Mato and 4 more

Abstract read
In one paragraph

Article in Leukemia & lymphoma, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  8. Review
  9. Review
  10. Chronic lymphocytic leukemia with TP53 gene alterations: a detailed clinicopathologic analysis.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
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  14. Characterization of a variant of t(14;18) negative nodal diffuse follicular lymphoma with CD23 expression, 1p36/TNFRSF14 abnormalities, and STAT6 mutations.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jane HouldsworthCancer Genetics, Inc. , Rutherford, NJ , USA.
Asha Guttapalli
Venkata Thodima
Xiao Jie Yan
Geetu Mendiratta
Tania Zielonka
Gouri Nanjangud
Weiyi Chen
Sujata Patil
Anthony Mato
Jennifer R Brown
Kanti Rai
Nicholas Chiorazzi
R S K Chaganti

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

Array comparative genomic hybridization (aCGH) has yet to be fully leveraged in a prognostic setting in chronic lymphocytic leukemia (CLL). Genomic imbalance was assessed in 288 CLL specimens using a targeted array. Based on 20 aberrations in a hierarchical manner, all 228 treatment-naive specimens were classified into a group with poor outcome (20.6%) exhibiting at least one aberration that was univariately associated with adverse outcome (gain: 2p, 3q, 8q, 17q, loss: 7q, 8p, 11q, 17p, 18p), good outcome (32.5%) showing 13q14 loss without any of the other 10 aberrations (gain: 1p, 7p, 12, 18p, 18q, 19, loss: 4p, 5p, 6q, 7p) or intermediate outcome (remainder). The three groups were significantly separated with respect to time to first treatment and overall survival (p < 0.001), and validation of the stratification scheme was performed in two independent datasets. Gain of 3q and 8q, and 17p loss were determined to be independent unfavorable prognostic biomarkers. TP53, NOTCH1 and SF3B1 mutations correlated with the presence of one poor outcome aCGH marker, at a considerably higher frequency than when only considering poor risk aberrations routinely detected by fluorescence in situ hybridization (FISH). These data support genomic imbalance evaluation in CLL by aCGH to assist in risk stratification.

Indexed as

Chromosome AberrationsGenomicsBiomarkers, TumorChromosome DeletionChromosomes, Human, Pair 13Comparative Genomic HybridizationDatasets as TopicFemaleHumansImmunoglobulin Heavy ChainsIn Situ Hybridization, FluorescenceLeukemia, Lymphocytic, Chronic, B-CellMaleMutationNeoplasm StagingPatient Outcome AssessmentBiomarkers, TumorImmunoglobulin Heavy Chains

Identifiers

PMID24047479
PMCPMC6905429

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.