Evidence map›Paper›PMID 24045991›Full record

ArticleInvestigative ophthalmology & visual science2013

Gene expression signatures in tree shrew sclera in response to three myopiagenic conditions.

Lin Guo, Michael R Frost, Li He, John T Siegwart, Thomas T Norton

Open access · bronzeAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 73 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Altered Structure and Function of Murine Sclera in Form-Deprivation Myopia.Investigative ophthalmology & visual science · 2022
    Article
  9. Article
  10. Review
  11. Decreased Choroidal Blood Perfusion Induces Myopia in Guinea Pigs.Investigative ophthalmology & visual science · 2021
    Article
  12. Amber light treatment produces hyperopia in tree shrews.Ophthalmic & physiological optics : the journal of the British College of Ophthalmic Opticians (Optometrists) · 2021
    Article
  13. Article
  14. Article
  15. Near Infrared (NIR) Light Therapy of Eye Diseases: A Review.International journal of medical sciences · 2021
    Review
  16. Article
  17. Article
  18. Scleral structure and biomechanics.Progress in retinal and eye research · 2020
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Lin GuoDepartment of Vision Sciences, School of Optometry, University of Alabama at Birmingham, Birmingham, Alabama.
Michael R Frost
Li He
John T Siegwart
Thomas T Norton
University of Alabama at Birmingham · US

Funding

Visual Phenotyping CoreP30EY003039 · NEI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LAWRENCE C SINCICH · 1985 to 2026
$16.9M
MECHANISMS OF OCULAR DEVELOPMENTR01EY005922 · NEI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI NORTON, THOMAS T · 1986 to 2012
$4.5M
NEI NIH HHS EY005922NEI NIH HHS P30 EY003039NEI NIH HHS R01 EY005922
6 · The paper itself

Abstract

purposeWe compared gene expression signatures in tree shrew sclera produced by three different visual conditions that all produce ocular elongation and myopia: minus-lens wear, form deprivation, and dark treatment.

methodsSix groups of tree shrews (n = 7 per group) were used. Starting 24 days after normal eye-opening (days of visual experience [DVE]), two minus-lens groups wore a monocular -5 diopter (D) lens for 2 days (ML-2) or 4 days (ML-4); two form-deprivation groups wore a monocular translucent diffuser for 2 days (FD-2) or 4 days (FD-4). A dark-treatment (DK) group was placed in continuous darkness for 11 days after experiencing a light/dark environment until 17 DVE. A normal colony-reared group was examined at 28 DVE. Quantitative PCR was used to measure the relative differences in mRNA levels for 55 candidate genes in the sclera that were selected, either because they showed differential expression changes in previous ML studies or because a whole-transcriptome analysis suggested they would change during myopia development.

resultsThe treated eyes in all groups responded with a significant myopic shift, indicating that the myopia was actively progressing. In the ML-2 group, 27 genes were significantly downregulated in the treated eyes, relative to control eyes. In the treated eyes of the FD-2 group, 16 of the same genes also were significantly downregulated and one was upregulated. The two gene expression patterns were significantly correlated (r(2) = 0.90, P < 0.001). After 4 days of treatment, 31 genes were significantly downregulated in the treated eyes of the ML-4 group and three were upregulated. Twenty-nine of the same genes (26 down- and 3 up-regulated) and six additional genes (all downregulated) were significantly affected in the FD-4 group. The response patterns were highly correlated (r(2) = 0.95, P < 0.001). When the DK group (mean of right and left eyes) was compared to the control eyes of the ML-4 group, the direction and magnitude of the gene expression patterns were similar to those of the ML-4 (r(2) = 0.82, P < 0.001, excluding PENK). Similar patterns also were found when the treated eyes of the ML-4, FD-4, and DK groups were compared to the age-matched normal eyes.

conclusionsThe very similar gene expression signatures produced in the sclera by the three different myopiagenic visual conditions at different time points suggests that there is a "scleral remodeling signature" in this mammal, closely related to primates. The scleral genes examined did not distinguish between the specific visual stimuli that initiate the signaling cascade that results in axial elongation and myopia.

Indexed as

Analysis of VarianceAnimalsDisease Models, AnimalGene Expression ProfilingMyopiaReal-Time Polymerase Chain ReactionRNA, MessengerScleraSensory DeprivationTupaiidaeRNA, Messengeranimal modelsaxial elongationemmetropizationgene expressionmyopiarefractive errorsclera

Identifiers

PMID24045991
PMCPMC3805087
OpenAlexW2009444499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.