Evidence map›Paper›PMID 24045858›Full record

ArticleNature communications2013

The tiger genome and comparative analysis with lion and snow leopard genomes.

Yun Sung Cho, Li Hu, Haolong Hou, Hang Lee, Jiaohui Xu, Soowhan Kwon, Sukhun Oh, Hak-Min Kim, Sungwoong Jho, Sangsoo Kim and 48 more

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 325 citations in OpenAlex.

  1. Article
  2. First Genome Assembly of the Critically Endangered Arabian Leopard (International journal of molecular sciences · 2026
    Article
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  7. The Japanese Archipelago sheltered cave lions, not tigers, during the Late Pleistocene.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Exploring the genetic footprints of high altitude adapted humans and livestock.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Review
  9. Exceedingly low genetic diversity in snow leopards due to persistently small population size.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

58 authors at 20 institutions in 10 countries.

Yun Sung ChoPersonal Genomics Institute, Genome Research Foundation, Suwon 443-270, Republic of Korea.
Li Hu
Haolong Hou
Hang Lee
Jiaohui Xu
Soowhan Kwon
Sukhun Oh
Hak-Min Kim
Sungwoong Jho
Sangsoo Kim
Young-Ah Shin
Byung Chul Kim
Hyunmin Kim
Chang-Uk Kim
Shu-Jin Luo
Warren E Johnson
Klaus-Peter Koepfli
Anne Schmidt-Küntzel
Jason A Turner
Laurie Marker
Cindy Harper
Susan M Miller
Wilhelm Jacobs
Laura D Bertola
Tae Hyung Kim
Sunghoon Lee
Qian Zhou
Hyun-Ju Jung
Xiao Xu
Priyvrat Gadhvi
Pengwei Xu
Yingqi Xiong
Yadan Luo
Shengkai Pan
Caiyun Gou
Xiuhui Chu
Jilin Zhang
Sanyang Liu
Jing He
Ying Chen
Linfeng Yang
Yulan Yang
Jiaju He
Sha Liu
Junyi Wang
Chul Hong Kim
Hwanjong Kwak
Jong-Soo Kim
Seungwoo Hwang
Junsu Ko
Chang-Bae Kim
Sangtae Kim
Damdin Bayarlkhagva
Woon Kee Paek
Seong-Jin Kim
Stephen J O'Brien
Jun Wang
Jong Bhak
BGI Group (China) · CNGenome Research Foundation · KRTheragen · KRSoongsil University · KRCheetah Conservation Fund · NAPeking University · CNSamsung (South Korea) · KRSangmyung University · KRUniversity of Pretoria · ZAAdvanced Institute of Convergence Technology · KRKing Abdulaziz University · SAKorea Research Institute of Bioscience and Biotechnology · KRLeiden University · NLNational Science Museum · KRNational University of Mongolia · MNNova Southeastern University · USSeoul National University · KRSmithsonian Conservation Biology Institute · USSt Petersburg University · RUUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tigers and their close relatives (Panthera) are some of the world's most endangered species. Here we report the de novo assembly of an Amur tiger whole-genome sequence as well as the genomic sequences of a white Bengal tiger, African lion, white African lion and snow leopard. Through comparative genetic analyses of these genomes, we find genetic signatures that may reflect molecular adaptations consistent with the big cats' hypercarnivorous diet and muscle strength. We report a snow leopard-specific genetic determinant in EGLN1 (Met39>Lys39), which is likely to be associated with adaptation to high altitude. We also detect a TYR260G>A mutation likely responsible for the white lion coat colour. Tiger and cat genomes show similar repeat composition and an appreciably conserved synteny. Genomic data from the five big cats provide an invaluable resource for resolving easily identifiable phenotypes evident in very close, but distinct, species.

Indexed as

Adaptation, PhysiologicalAmino Acid SequenceAnimalsGenetic VariationGenomeLionsMolecular Sequence DataMutationPantheraPopulation DensitySyntenyTigers

Identifiers

PMID24045858
PMCPMC3778509
OpenAlexW2154096947

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.