Evidence map›Paper›PMID 24045012›Full record

ArticleBiochemical and biophysical research communications2013

Malignant transformation of colonic epithelial cells by a colon-derived long noncoding RNA.

Jeffrey L Franklin, Carl R Rankin, Shawn Levy, Jay R Snoddy, Bing Zhang, Mary Kay Washington, J Michael Thomson, Robert H Whitehead, Robert J Coffey

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Potential Links Between ANRIL and MiRNAs in Various Cancers.Combinatorial chemistry & high throughput screening · 2025
    Review
  3. An Overview of the Biological Complexity of Vitiligo.Oxidative medicine and cellular longevity · 2024
    Review
  4. Article
  5. Review
  6. Review
  7. Interaction and cross-talk between non-coding RNAs.Cellular and molecular life sciences : CMLS · 2018
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Functional interactions among microRNAs and long noncoding RNAs.Seminars in cell & developmental biology · 2014
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jeffrey L FranklinDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN 37232, United States; Department of Medicine, Vanderbilt University, Nashville, TN 37232, United States; Department of Veterans Affairs Medical Center, Nashville, TN 37232, United States. Electronic address: Jeff.franklin@vanderbilt.edu.
Carl R Rankin
Shawn Levy
Jay R Snoddy
Bing Zhang
Mary Kay Washington
J Michael Thomson
Robert H Whitehead
Robert J Coffey
Vanderbilt University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Understanding and Controlling p120 Dysfunction in CRCP50CA095103 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI COFFEY, ROBERT J. · 2002 to 2017
$33.6M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
TRANSFORMING GROWTH FACTORS IN COLONIC NEOPLASIAR01CA046413 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI COFFEY, ROBERT J. · 1988 to 2016
$8.8M
Prevention &Metastasis: Final Frontiers in Colon CancerU01CA084239 · NCI · VANDERBILT UNIVERSITY · PI COFFEY, ROBERT J. · 1999 to 2009
$8.0M
Roles for Lrig1 in Intestinal NeoplasiaR01CA151566 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI COFFEY, ROBERT J. · 2010 to 2016
$2.1M
NCI NIH HHS CA 151566NCI NIH HHS CA 46413NCI NIH HHS P30 CA068485NCI NIH HHS P50 CA095103NCI NIH HHS R01 CA046413NCI NIH HHS R01 CA151566NCI NIH HHS U01 CA084239NIDDK NIH HHS P30 DK058404NIDDK NIH HHS P30DK058404NIDDK NIH HHS P30 DK58404
6 · The paper itself

Abstract

Recent progress has been made in the identification of protein-coding genes and miRNAs that are expressed in and alter the behavior of colonic epithelia. However, the role of long non-coding RNAs (lncRNAs) in colonic homeostasis is just beginning to be explored. By gene expression profiling of post-mitotic, differentiated tops and proliferative, progenitor-compartment bottoms of microdissected adult mouse colonic crypts, we identified several lncRNAs more highly expressed in crypt bottoms. One identified lncRNA, designated non-coding Nras functional RNA (ncNRFR), resides within the Nras locus but appears to be independent of the Nras coding transcript. Stable overexpression of ncNRFR in non-transformed, conditionally immortalized mouse colonocytes results in malignant transformation, as determined by growth in soft agar and formation of highly invasive tumors in nude mice. Moreover, ncNRFR appears to inhibit the function of the tumor suppressor let-7. These results suggest precise regulation of ncNRFR is necessary for proper cell growth in the colonic crypt, and its misregulation results in neoplastic transformation.

Indexed as

Cell Transformation, NeoplasticGene Expression Regulation, NeoplasticAnimalsColonColonic NeoplasmsEpithelial CellsGene Expression ProfilingMiceMice, NudeMicroRNAsRNA, Long NoncodingMicroRNAsmirnlet7 microRNA, mouseRNA, Long Noncodingamplified RNAaRNABrdUbromodeoxyuridineColonColorectal cancerdays postcoitusdpcgene set enrichment analysisGSEAin situ hybridizationIntestineISHlet-7lncRNAslong non-coding RNAsncNRFRnon-coding Nras functional RNANon-coding RNAPCCPCRpolymerase chain reactionprogenitor cell compartmentProgenitor cellssiRNAsmall interfering RNAsuntranslated regionsUTRsYAMCYoung adult mouse colon

Identifiers

PMID24045012
PMCPMC3875348
OpenAlexW2006437355

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.