Evidence map›Paper›PMID 24043847›Full record

ArticleJournal of experimental botany2013

Making open data work for plant scientists.

Sabina Leonelli, Nicholas Smirnoff, Jonathan Moore, Charis Cook, Ruth Bastow

Abstract read
In one paragraph

Article in Journal of experimental botany, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sabina LeonelliEgenis & Department of Sociology, Philosophy and Anthropology, Byrne House, St Germans Road, Exeter EX4 4PJ, UK.
Nicholas Smirnoff
Jonathan Moore
Charis Cook
Ruth Bastow

Funding

Biotechnology and Biological Sciences Research Council BB/F005806/1Biotechnology and Biological Sciences Research Council BB/F005903/1Biotechnology and Biological Sciences Research Council BB/G021481/1Biotechnology and Biological Sciences Research Council BBG0214811Biotechnology and Biological Sciences Research Council BB/I020004/1Biotechnology and Biological Sciences Research Council BB/J004057/1Biotechnology and Biological Sciences Research Council BB/K013602/1
6 · The paper itself

Abstract

Despite the clear demand for open data sharing, its implementation within plant science is still limited. This is, at least in part, because open data-sharing raises several unanswered questions and challenges to current research practices. In this commentary, some of the challenges encountered by plant researchers at the bench when generating, interpreting, and attempting to disseminate their data have been highlighted. The difficulties involved in sharing sequencing, transcriptomics, proteomics, and metabolomics data are reviewed. The benefits and drawbacks of three data-sharing venues currently available to plant scientists are identified and assessed: (i) journal publication; (ii) university repositories; and (iii) community and project-specific databases. It is concluded that community and project-specific databases are the most useful to researchers interested in effective data sharing, since these databases are explicitly created to meet the researchers' needs, support extensive curation, and embody a heightened awareness of what it takes to make data reuseable by others. Such bottom-up and community-driven approaches need to be valued by the research community, supported by publishers, and provided with long-term sustainable support by funding bodies and government. At the same time, these databases need to be linked to generic databases where possible, in order to be discoverable to the majority of researchers and thus promote effective and efficient data sharing. As we look forward to a future that embraces open access to data and publications, it is essential that data policies, data curation, data integration, data infrastructure, and data funding are linked together so as to foster data access and research productivity.

Indexed as

Access to InformationInformation DisseminationScienceHigh-Throughput Screening AssaysInformation Storage and RetrievalPlantsdatabasesData sharingmetabolomicsopen dataproteomicspublicationrepositoriestranscriptomics.

Identifiers

PMID24043847
PMCPMC3808334

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.