Evidence map›Paper›PMID 24043797›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Early evolution of the T-box transcription factor family.

Arnau Sebé-Pedrós, Ana Ariza-Cosano, Matthew T Weirauch, Sven Leininger, Ally Yang, Guifré Torruella, Marcin Adamski, Maja Adamska, Timothy R Hughes, José Luis Gómez-Skarmeta and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
16.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
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  13. The Non-continuum Nature of Eukaryotic Transcriptional Regulation.Advances in experimental medicine and biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 4 countries.

Arnau Sebé-PedrósInstitut de Biologia Evolutiva (Consejo Superior de Investigaciones Científicas-Universitat Pompeu Fabra), 08003 Barcelona, Spain.
Ana Ariza-Cosano
Matthew T Weirauch
Sven Leininger
Ally Yang
Guifré Torruella
Marcin Adamski
Maja Adamska
Timothy R Hughes
José Luis Gómez-Skarmeta
Iñaki Ruiz-Trillo
Norwegian Institute of Marine Research · NOCentro Andaluz de Biología del Desarrollo · ESUniversity of Toronto · CACincinnati Children's Hospital Medical Center · USConsejo Superior de Investigaciones Científicas · ESInstitució Catalana de Recerca i Estudis Avançats · ESPompeu Fabra University · ES

Funding

CIHR MOP-111007European Research Council 206883
6 · The paper itself

Abstract

Developmental transcription factors are key players in animal multicellularity, being members of the T-box family that are among the most important. Until recently, T-box transcription factors were thought to be exclusively present in metazoans. Here, we report the presence of T-box genes in several nonmetazoan lineages, including ichthyosporeans, filastereans, and fungi. Our data confirm that Brachyury is the most ancient member of the T-box family and establish that the T-box family diversified at the onset of Metazoa. Moreover, we demonstrate functional conservation of a homolog of Brachyury of the protist Capsaspora owczarzaki in Xenopus laevis. By comparing the molecular phenotype of C. owczarzaki Brachyury with that of homologs of early branching metazoans, we define a clear difference between unicellular holozoan and metazoan Brachyury homologs, suggesting that the specificity of Brachyury emerged at the origin of Metazoa. Experimental determination of the binding preferences of the C. owczarzaki Brachyury results in a similar motif to that of metazoan Brachyury and other T-box classes. This finding suggests that functional specificity between different T-box classes is likely achieved by interaction with alternative cofactors, as opposed to differences in binding specificity.

Indexed as

Evolution, MolecularPhenotypePhylogenyAnimalsBrachyury ProteinFetal ProteinsHistocytochemistryMesomycetozoeaMicroarray AnalysisMultigene FamilyProtein BindingReal-Time Polymerase Chain ReactionSpecies SpecificityT-Box Domain ProteinsXenopusBrachyury ProteinFetal ProteinsT-Box Domain ProteinsHolozoaorigin multicellularityPoriferapremetazoan evolutionsubfunctionalization

Identifiers

PMID24043797
PMCPMC3791752
OpenAlexW2011515619

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.