Evidence map›Paper›PMID 24043700›Full record

ArticleThe Journal of cell biology2013

pH sensing by FAK-His58 regulates focal adhesion remodeling.

Chang-Hoon Choi, Bradley A Webb, Michael S Chimenti, Matthew P Jacobson, Diane L Barber

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Evolution of pH-sensitive transcription termination inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Review
  11. pH-regulated single cell migration.Pflugers Archiv : European journal of physiology · 2024
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. FAK in Cancer: From Mechanisms to Therapeutic Strategies.International journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Chang-Hoon ChoiDepartment of Cell and Tissue Biology and 2 Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94143.
Bradley A Webb
Michael S Chimenti
Matthew P Jacobson
Diane L Barber
Cell and Tissue Systems (United States) · USUniversity of California, San Francisco · US

Funding

MECHANISMS OF RECEPTOR-REGULATED NA+/H+ EXCHANGER01GM047413 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BARBER, DIANE L · 1993 to 2014
$4.2M
Actions of the Sodium-Hydrogen Exchanger Subtype, NHE1R01GM058642 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BARBER, DIANE L · 1999 to 2012
$3.4M
Spinning disk confocal / FRAP microscope for quantitative live cell imagingS10RR026758 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTMANN, TORSTEN · 2010 to 2010
$500k
NCRR NIH HHS S10 RR026758NIGMS NIH HHS GM47413NIGMS NIH HHS GM58642NIGMS NIH HHS R01 GM047413NIGMS NIH HHS R01 GM058642
6 · The paper itself

Abstract

Intracellular pH (pHi) dynamics regulates diverse cellular processes, including remodeling of focal adhesions. We now report that focal adhesion kinase (FAK), a key regulator of focal adhesion remodeling, is a pH sensor responding to physiological changes in pH. The initial step in FAK activation is autophosphorylation of Tyr397, which increased with higher pHi. We used a genetically encoded biosensor to show increased pH at focal adhesions as they mature during cell spreading. We also show that cells with reduced pHi had attenuated FAK-pY397 as well as defective cell spreading and focal adhesions. Mutagenesis studies indicated FAK-His58 is critical for pH sensing and molecular dynamics simulations suggested a model in which His58 deprotonation drives conformational changes that may modulate accessibility of Tyr397 for autophosphorylation. Expression of FAK-H58A in fibroblasts was sufficient to restore defective autophosphorylation and cell spreading at low pHi. These data are relevant to understanding cancer metastasis, which is dependent on increased pHi and FAK activity.

Indexed as

AnimalsBlotting, WesternBreast NeoplasmsCation Transport ProteinsCells, CulturedEmbryo, MammalianFemaleFibroblastsFluorescent Antibody TechniqueFocal Adhesion Kinase 1Focal AdhesionsHistidineHumansHydrogen-Ion ConcentrationImmunoenzyme TechniquesKeratinocytesCation Transport ProteinsFocal Adhesion Kinase 1HistidinePtk2 protein, mouseRNA, MessengerRNA, Small InterferingSlc9a1 protein, mouseSodium-Hydrogen Exchanger 1Sodium-Hydrogen Exchangers

Identifiers

PMID24043700
PMCPMC3776353
OpenAlexW2022350385

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.