ArticlePloS one2013
Transcriptome analysis of yellow horn (Xanthoceras sorbifolia Bunge): a potential oil-rich seed tree for biodiesel in China.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.
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20 citing papers in PubMed.
- Molecular Mechanisms of Oil and Saponin Accumulation and the Regulation of Carbohydrate Metabolism inPlants (Basel, Switzerland) · 2026Article
- The Biosynthesis Pattern and Transcriptome Analysis ofPlants (Basel, Switzerland) · 2024Article
- Agronomic, physiological and transcriptional characteristics provide insights into fatty acid biosynthesis in yellowhorn (Frontiers in genetics · 2024Article
- Study on molecular mechanism of volatiles variation duringFrontiers in plant science · 2023Article
- Differentiated responses of the phyllosphere bacterial community of the yellowhorn tree to precipitation and temperature regimes across Northern China.Frontiers in plant science · 2023Article
- Influence of planting yellowhorn (PeerJ · 2022Article
- Small RNA profiling for identification of microRNAs involved in regulation of seed development and lipid biosynthesis in yellowhorn.BMC plant biology · 2021Article
- Transcriptome analysis of genes involved in starch biosynthesis in developing Chinese chestnut (Castanea mollissima Blume) seed kernels.Scientific reports · 2021Article
- Retracted Article: Investigation of yellow horn (RSC advances · 2020Article
- Article
- Integrated transcriptomic and metabolomic analyses of yellow horn (Xanthoceras sorbifolia) in response to cold stress.PloS one · 2020Article
- Article
- Integrated analysis of transcriptomic and proteomic data from tree peony (Horticulture research · 2019Article
- Comparative RNA-Seq Analysis of High- and Low-Oil Yellow Horn During Embryonic Development.International journal of molecular sciences · 2018Article
- Integrated analysis of 454 and Illumina transcriptomic sequencing characterizes carbon flux and energy source for fatty acid synthesis in developingBiotechnology for biofuels · 2017Article
- Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit.BMC genomics · 2016Article
- Article
- Transcriptome Analysis Comparison of Lipid Biosynthesis in the Leaves and Developing Seeds of Brassica napus.PloS one · 2015Article
- De Novo Transcriptome Assembly in Firmiana danxiaensis, a Tree Species Endemic to the Danxia Landform.PloS one · 2015Article
- Transcriptomic analysis revealed the mechanism of oil dynamic accumulation during developing Siberian apricot (Prunus sibirica L.) seed kernels for the development of woody biodiesel.Biotechnology for biofuels · 2015Article
Corrections and comments
- Erratum issued
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundYellow horn (Xanthoceras sorbifolia Bunge) is an oil-rich seed shrub that grows well in cold, barren environments and has great potential for biodiesel production in China. However, the limited genetic data means that little information about the key genes involved in oil biosynthesis is available, which limits further improvement of this species. In this study, we describe sequencing and de novo transcriptome assembly to produce the first comprehensive and integrated genomic resource for yellow horn and identify the pathways and key genes related to oil accumulation. In addition, potential molecular markers were identified and compiled. METHODOLOGY/PRINCIPAL
findingsTotal RNA was isolated from 30 plants from two regions, including buds, leaves, flowers and seeds. Equal quantities of RNA from these tissues were pooled to construct a cDNA library for 454 pyrosequencing. A total of 1,147,624 high-quality reads with total and average lengths of 530.6 Mb and 462 bp, respectively, were generated. These reads were assembled into 51,867 unigenes, corresponding to a total of 36.1 Mb with a mean length, N50 and median of 696, 928 and 570 bp, respectively. Of the unigenes, 17,541 (33.82%) were unmatched in any public protein databases. We identified 281 unigenes that may be involved in de novo fatty acid (FA) and triacylglycerol (TAG) biosynthesis and metabolism. Furthermore, 6,707 SSRs, 16,925 SNPs and 6,201 InDels with high-confidence were also identified in this study.
conclusionsThis transcriptome represents a new functional genomics resource and a foundation for further studies on the metabolic engineering of yellow horn to increase oil content and modify oil composition. The potential molecular markers identified in this study provide a basis for polymorphism analysis of Xanthoceras, and even Sapindaceae; they will also accelerate the process of breeding new varieties with better agronomic characteristics.
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